Alignments for a candidate for hisD in Pseudomonas stutzeri RCH2

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate GFF3235 Psest_3298 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>FitnessBrowser__psRCH2:GFF3235
          Length = 436

 Score =  410 bits (1053), Expect = e-119
 Identities = 217/428 (50%), Positives = 285/428 (66%), Gaps = 1/428 (0%)

Query: 2   VTTLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDL 61
           +  L   D DF +     LS +    E V+  V EI+  VR  GD+AL++ ++RFD + +
Sbjct: 7   IRRLNAADADFARHLDHLLSWESVSDEGVNERVLEIIKAVRERGDAALVELTQRFDGLQV 66

Query: 62  EKTG-IAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSR 120
                + +  A ++ A +    +  EAL++A +R+  +H RQ      YT+A G  LG +
Sbjct: 67  ASMADLILPRARLEQALERITPAQREALEIAAERVSSYHERQKQDSWTYTEADGTVLGQK 126

Query: 121 WTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAG 180
            T ++  GLYVPGG ASYPSSVLMNA+PAKVAGV  +VMVVP P G LN LVL AA +AG
Sbjct: 127 VTPLDRAGLYVPGGKASYPSSVLMNAIPAKVAGVPEVVMVVPTPRGELNELVLAAACIAG 186

Query: 181 VSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVL 240
           V  ++ +GGAQA+AALAYGTE++ PV KIVGPGN YVA AKR VFG VGIDMIAGPSE+L
Sbjct: 187 VDRVFTIGGAQAVAALAYGTESVPPVDKIVGPGNIYVATAKRHVFGKVGIDMIAGPSEIL 246

Query: 241 IVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASA 300
           +V D   +PDWIA DL +QAEHD  AQSIL++ D  F   V E++ R L TL R + A  
Sbjct: 247 VVCDGQTDPDWIAMDLFSQAEHDEDAQSILVSPDAEFLDRVAESIARLLPTLERADIART 306

Query: 301 SWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIG 360
           S    GA+ILV D + AI +ANRIA EHLE++VA+ E ++P+IR+AG+IF+G YT E +G
Sbjct: 307 SIEGRGALILVADMQQAIEVANRIAPEHLELSVAEPEQWLPQIRHAGAIFMGRYTAEALG 366

Query: 361 DYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAH 420
           DY  G NHVLPT+ +ARFSS L V D+ KR+S++   +E    LG  A  +AR E L AH
Sbjct: 367 DYCAGPNHVLPTSGTARFSSPLGVYDFQKRSSIINCSAEGASTLGKVASVLARGESLTAH 426

Query: 421 AQSVAIRL 428
           A+S   R+
Sbjct: 427 ARSAEYRI 434


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 502
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 436
Length adjustment: 32
Effective length of query: 398
Effective length of database: 404
Effective search space:   160792
Effective search space used:   160792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate GFF3235 Psest_3298 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.8340.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8340.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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