Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Asp/Glu-ADT subunit C; EC 6.3.5.- (uncharacterized)
to candidate GFF3265 Psest_3328 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit
Query= curated2:Q48E93
(95 letters)
>FitnessBrowser__psRCH2:GFF3265
Length = 95
Score = 162 bits (410), Expect = 8e-46
Identities = 79/95 (83%), Positives = 90/95 (94%)
Query: 1 MALERSDVEKIAHLARLGLNDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEATQ 60
MALER++VEKIAHLARLGL++AD+PRTTE LN+ILGL+D+MQAVDTTGIEPLAHPLE TQ
Sbjct: 1 MALERTEVEKIAHLARLGLSEADLPRTTETLNNILGLIDRMQAVDTTGIEPLAHPLETTQ 60
Query: 61 RLREDAVTERNRRDTYQAIAPAVQDGLYLVPKVIE 95
RLR DAVTE N+RD YQAIAPAV+DGLYLVP+VIE
Sbjct: 61 RLRADAVTETNQRDAYQAIAPAVEDGLYLVPRVIE 95
Lambda K H
0.316 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 95
Length adjustment: 10
Effective length of query: 85
Effective length of database: 85
Effective search space: 7225
Effective search space used: 7225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 39 (19.6 bits)
Align candidate GFF3265 Psest_3328 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.18827.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18827.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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