Alignments for a candidate for fadA in Phaeobacter inhibens BS107

Align 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (characterized)
to candidate GFF3267 PGA1_c33180 acetyl-CoA acetyltransferase

Query= reanno::acidovorax_3H11:Ac3H11_2994
         (397 letters)



>FitnessBrowser__Phaeo:GFF3267
          Length = 390

 Score =  487 bits (1253), Expect = e-142
 Identities = 247/387 (63%), Positives = 292/387 (75%), Gaps = 2/387 (0%)

Query: 9   IVIVGAARTPMGSLQGDFSSLAAHDLGGAAIKAAIERAGVSPDAVGEVLFGNCLMAGQGQ 68
           +VI GAARTPMG  QG +  +AA +LGG+AI+AA+  AG +   V E+L G  L AGQGQ
Sbjct: 4   VVIAGAARTPMGGFQGMYDGVAAAELGGSAIRAALAGAGAT--TVDEILMGCVLPAGQGQ 61

Query: 69  APARQAAFKGGLPKGAGAVTLSKMCGSGMKAAMMAHDMLLAGSHDVMVAGGMESMTNAPY 128
           APARQA F  GL +   A TL+KMCGSGMKAAMMA+D +  G  D M+AGGMESMTNAPY
Sbjct: 62  APARQAGFAAGLGEEVPATTLNKMCGSGMKAAMMAYDQIALGQADTMIAGGMESMTNAPY 121

Query: 129 LLQKGRGGYRLGHDRIFDHMMLDGLEDAYEAGRSMGTFGEDCAAKYSFTREQQDAFATAS 188
           LL K R G RLGH ++ DHM LDGLEDAY+ GR MGTF EDCA  Y FTRE QD +A  S
Sbjct: 122 LLPKMRNGARLGHGQVVDHMFLDGLEDAYDKGRLMGTFAEDCAETYQFTREAQDEYALTS 181

Query: 189 VQRAKAATESGAFAAEIVPVTVKTRAGETVVSVDEGPGKVKLEKIATLKPAFKKDGTITA 248
           +  A AA ESGAF AEI PVTVKTR GETV + DE P   + +KI TLKPAF+KDGT+TA
Sbjct: 182 LSNALAAQESGAFDAEIAPVTVKTRKGETVTNADEQPKSARPDKIPTLKPAFRKDGTVTA 241

Query: 249 ASSSSINDGAAALVMMRESTAKKLGAKPLARIVSHATHAQEPEWFATAPLGATQKALAKA 308
           A++SSI+DGAAALV+  E  A+  G    ARI+ HA+HAQ P  F TAP+ A +K +A+ 
Sbjct: 242 ANASSISDGAAALVLASEDAAEAQGLTVRARIMGHASHAQAPGLFTTAPVPAAKKLMAQL 301

Query: 309 GWQVGDVQLWEINEAFAVVPMALMKELDLPHDKVNVNGGACALGHPIGASGARIMVTLIH 368
           GW V DV LWE+NEAFAVVPMA M E+ LP DKVNVNGGACALGHPIGASGARIMVTL++
Sbjct: 302 GWTVSDVDLWEVNEAFAVVPMAFMHEMGLPRDKVNVNGGACALGHPIGASGARIMVTLLN 361

Query: 369 ALKARGLTKGLATLCIGGGEATAVALE 395
           AL+ R L +G+A +CIGGGE TA+A+E
Sbjct: 362 ALEKRNLKRGIAAICIGGGEGTAIAIE 388


Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 510
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 390
Length adjustment: 31
Effective length of query: 366
Effective length of database: 359
Effective search space:   131394
Effective search space used:   131394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate GFF3267 PGA1_c33180 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.8665.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8665.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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