Alignments for a candidate for fadA in Phaeobacter inhibens BS107

Align Beta-ketothiolase BktB; Acetyl-CoA acetyltransferase; Acetyl-CoA acyltransferase; EC 2.3.1.16; EC 2.3.1.9 (characterized)
to candidate GFF3382 PGA1_c34350 acetyl-CoA acetyltransferase PhbA

Query= SwissProt::Q0KBP1
         (394 letters)



>FitnessBrowser__Phaeo:GFF3382
          Length = 391

 Score =  457 bits (1176), Expect = e-133
 Identities = 230/391 (58%), Positives = 293/391 (74%), Gaps = 2/391 (0%)

Query: 4   EVVVVSGVRTAIGTFGGSLKDVAPAELGALVVREALARAQVSGDDVGHVVFGNVIQTEPR 63
           ++V++ G RTAIGTFGGSL    P +L  +  + A+ R+ V+ + +G+VVFG+VI TEPR
Sbjct: 3   DIVILDGARTAIGTFGGSLAGTTPIDLATVASKAAMERSGVAPEQIGNVVFGHVINTEPR 62

Query: 64  DMYLGRVAAVNGGVTINAPALTVNRLCGSGLQAIVSAAQTILLGDTDVAIGGGAESMSRA 123
           DMYL RVAA+  G+    PA+ VNRLCGSG QAIVS  Q+++LGD + A+ GGAE+MSR+
Sbjct: 63  DMYLSRVAAMQAGIPNGTPAMNVNRLCGSGAQAIVSGIQSLMLGDAEFALTGGAENMSRS 122

Query: 124 PYLAPAARWGARMGDAGLVDMMLGALHDPFHRIHMGVTAENVAKEYDISRAQQDEAALES 183
           P++ P+ARWG +MGDA  +DMMLGAL+ PF   HMGVTAENVA E+DI+RAQ DE AL S
Sbjct: 123 PFIVPSARWGQKMGDARALDMMLGALNCPFGTGHMGVTAENVADEHDITRAQMDEFALAS 182

Query: 184 HRRASAAIKAGYFKDQIVPVVSKGRKGDVTFDTDEHVRHDATIDDMTKLRPVFVKENGTV 243
             RA+AAI+AGYF  QI PV  K ++  V FD DEH +  +T++ +  L+ VF K++G V
Sbjct: 183 QTRAAAAIEAGYFASQITPVEVKVKRDMVPFDVDEHPK-ASTLETLGGLKAVF-KKDGRV 240

Query: 244 TAGNASGLNDAAAAVVMMERAEAERRGLKPLARLVSYGHAGVDPKAMGIGPVPATKIALE 303
           TAGNASG+ND AAA+VM     A + GLKP AR++ Y HAGV P+ MGIGPVPA +  L+
Sbjct: 241 TAGNASGINDGAAAIVMATADAARQAGLKPKARILGYAHAGVRPEVMGIGPVPAVQNLLK 300

Query: 304 RAGLQVSDLDVIEANEAFAAQACAVTKALGLDPAKVNPNGSGISLGHPIGATGALITVKA 363
           + GL  SD DV+E+NEAFAAQA AV K LGLDPAKVNPNG  I+LGHP+GATGA+IT+K 
Sbjct: 301 KTGLSASDFDVVESNEAFAAQALAVNKELGLDPAKVNPNGGAIALGHPVGATGAIITLKT 360

Query: 364 LHELNRVQGRYALVTMCIGGGQGIAAIFERI 394
           L+EL R+ G   L+TMCIGGGQGIA   ER+
Sbjct: 361 LYELERIGGSKGLITMCIGGGQGIALAIERL 391


Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 501
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 391
Length adjustment: 31
Effective length of query: 363
Effective length of database: 360
Effective search space:   130680
Effective search space used:   130680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate GFF3382 PGA1_c34350 (acetyl-CoA acetyltransferase PhbA)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.13938.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13938.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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