Alignments for a candidate for lpd in Phaeobacter inhibens BS107

Align Dihydrolipoyl dehydrogenase; EC 1.8.1.4; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes (uncharacterized)
to candidate GFF344 PGA1_c03550 dihydrolipoyl dehydrogenase 2

Query= curated2:P95596
         (454 letters)



>FitnessBrowser__Phaeo:GFF344
          Length = 465

 Score =  654 bits (1688), Expect = 0.0
 Identities = 329/465 (70%), Positives = 375/465 (80%), Gaps = 11/465 (2%)

Query: 1   MAEFDVIIIGGGPGGYVCAIRCAQLGLKTACVEGRGALGGTCLNVGCIPSKALLHATHEL 60
           MA +DVI+IG GPGGYVCAIRCAQLGLKTA VEGR  LGGTCLNVGCIPSKALLH+TH L
Sbjct: 1   MASYDVIVIGAGPGGYVCAIRCAQLGLKTAVVEGRETLGGTCLNVGCIPSKALLHSTHLL 60

Query: 61  HEVHENFEKMGLMGAKVKVDWAK--------IDGNTKGIEFLFKKNKVTYLRGWGSIPAP 112
           HE   NF  MGL G    VDW++        I  NT GIEFLFKKNK+ +++GW S+   
Sbjct: 61  HEAEHNFAHMGLKGKSPSVDWSQMKSYKEEVIGQNTGGIEFLFKKNKIDWIKGWASLSEA 120

Query: 113 GQVKVGDEVHTAKNIVIATGSESSGLPGIEIDEQT--VVTSTGALSLAKVPKSMVVIGAG 170
           G+VKVGD+ H AKNIVIA+GS  S LPG+E+D     VV STGAL L K+PK MVVIGAG
Sbjct: 121 GKVKVGDDTHEAKNIVIASGSVPSSLPGVEVDNDKGIVVDSTGALDLPKIPKKMVVIGAG 180

Query: 171 VIGLELGSVYARLGAEVTVVEYLDAITPGMDAEVAKGLQRILTRQGLKFVLGAAVQGVDK 230
           VIGLELGSVYARLG++VTVVEY+DA+ PGMD +V +  +RIL +QGL F++GAAVQ V+ 
Sbjct: 181 VIGLELGSVYARLGSDVTVVEYMDAVCPGMDKDVQRSFKRILEKQGLNFIMGAAVQEVET 240

Query: 231 AKGKNTVRYTLRKDESAHAIEAEVVLVATGRKPFTKGLGLEALGVEMLPRGQVKADSHWA 290
           +K K  V+Y  +K      I+A+VVLVATGRKP+ +GLGL+ALGV+M  RGQ+  D+HWA
Sbjct: 241 SKTKAKVKYQPKKGGDEEVIDADVVLVATGRKPYAEGLGLDALGVKMTERGQIATDAHWA 300

Query: 291 TNVPGLYAIGDAIVGPMLAHKAEDEGMAVAEVIAGKHGHVNYDVIPGVIYTTPEVAAVGK 350
           TNV G+YAIGD I GPMLAHKAEDEGMAVAEVIA KHGHVNY VIPGV+YTTPEVA VG+
Sbjct: 301 TNVNGVYAIGDVIEGPMLAHKAEDEGMAVAEVIADKHGHVNYGVIPGVVYTTPEVATVGQ 360

Query: 351 TEDALKQEGRAYKVGKFSFMGNGRAKAVFQAE-GFVKILADAATDRILGAHIIGPSAGDM 409
           TEDALK EGR  K GKF FMGN RAKAV QAE GFVK++AD  TDRILGA IIGP AGD+
Sbjct: 361 TEDALKAEGRKIKTGKFMFMGNARAKAVHQAEGGFVKLIADKETDRILGAAIIGPGAGDL 420

Query: 410 IHEICVAMEFGASAQDLALTCHAHPTYSEAVREAALACGDGAIHA 454
           IHEICVAMEFGASA+DLALTCHAHPTYSEAVREAALACGDG IH+
Sbjct: 421 IHEICVAMEFGASAEDLALTCHAHPTYSEAVREAALACGDGPIHS 465


Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 848
Number of extensions: 42
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 465
Length adjustment: 33
Effective length of query: 421
Effective length of database: 432
Effective search space:   181872
Effective search space used:   181872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate GFF344 PGA1_c03550 (dihydrolipoyl dehydrogenase 2)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.13047.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13047.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.