Alignments for a candidate for serA in Phaeobacter inhibens BS107

Align phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized)
to candidate GFF3560 PGA1_c36140 D-3-phosphoglycerate dehydrogenase SerA

Query= CharProtDB::CH_004924
         (525 letters)



>FitnessBrowser__Phaeo:GFF3560
          Length = 531

 Score =  403 bits (1036), Expect = e-117
 Identities = 210/501 (41%), Positives = 312/501 (62%), Gaps = 5/501 (0%)

Query: 3   RVLVSDKMSNDGLQPLIESDFIEIVQKNVADAEDELHT----FDALLVRSATKVTEDLFN 58
           +VL+SDK+S   +Q   +       Q ++   +D+L      +D L +RSATKVT+ + +
Sbjct: 4   KVLISDKLSEAAVQIFRDRGIDVDFQPDLGKDKDKLAAIIGDYDGLAIRSATKVTQKILD 63

Query: 59  KMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQAN 118
             T+LK++ RAG+G DNID D A++ GVIV+N P GN I+TAEH  AM+ ++ R IP+A+
Sbjct: 64  NATNLKVIARAGIGTDNIDKDAASQKGVIVMNTPFGNMITTAEHAIAMMFAVARQIPEAS 123

Query: 119 ISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRRGAFGMTVHVFDPFLTEERAKK 178
            S  + +W ++ ++G EL  KTLG++G G IG  +  R     M V  +DPFL++E+A K
Sbjct: 124 ASTHAGKWEKSKFMGVELTNKTLGVIGAGNIGGIVCDRARGLKMKVVAYDPFLSQEKADK 183

Query: 179 IGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAAL 238
           IGV     +E+L  AD IT+H PLT +T+ +L+KE + KTKKGVR+INCARGG++DEAAL
Sbjct: 184 IGVEKVELDELLARADFITLHVPLTDQTRNILSKENLEKTKKGVRIINCARGGLVDEAAL 243

Query: 239 LEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQ 298
            E L +GHVAGAA DVF  EP   N L   P V+ TPHLGA+T EAQ NVA QV+E++  
Sbjct: 244 AELLTSGHVAGAAFDVFSEEPAKTNPLFGLPNVVCTPHLGAATSEAQENVALQVAEQMSN 303

Query: 299 FAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMKEPVQDVAIQYEGTIAKL 358
           +     V +A+N+P+MT +E   + P+  ++G +G  + Q   EP+Q + I Y+G  +++
Sbjct: 304 YLLDGAVENALNMPSMTAEEARVMGPWVALSGHLGGFIGQMTDEPIQAINILYDGVASEM 363

Query: 359 ETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYDNCISVKVTGD 418
             + +  ++++G +K +++  VN V+A  VA+ERGI  S         +D  I V V   
Sbjct: 364 NLAALNCSVVAGIMK-KLNPDVNMVSAPVVARERGIQISTTNQDKSGTFDGYIKVTVVTS 422

Query: 419 RSTFTVTATYIPHFGERIVEINGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINI 478
           +   +V  T       R ++I G NID     H++Y  ++D  G+IG +G+ILGD  +NI
Sbjct: 423 KRERSVAGTVFSDGKPRFIQIKGINIDAEVGAHMLYTTNEDVPGIIGTLGQILGDMGVNI 482

Query: 479 ATMQVGRKEKGGEAIMMLSFD 499
           A   +GR E GGEAI +L  D
Sbjct: 483 ANFTLGRSEAGGEAIALLYVD 503


Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 615
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 531
Length adjustment: 35
Effective length of query: 490
Effective length of database: 496
Effective search space:   243040
Effective search space used:   243040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate GFF3560 PGA1_c36140 (D-3-phosphoglycerate dehydrogenase SerA)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.13681.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13681.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.