Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate GFF3576 PGA1_c36310 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase DapD
Query= SwissProt::P56220 (274 letters) >FitnessBrowser__Phaeo:GFF3576 Length = 275 Score = 334 bits (856), Expect = 1e-96 Identities = 174/272 (63%), Positives = 209/272 (76%), Gaps = 5/272 (1%) Query: 3 QLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKID-GQWVTHQWLKK 61 QL+ IE+A+E R IT A R+A+ + + LDSG LRVAE+ D G W +QW KK Sbjct: 5 QLETAIEAAWEARDTITSATTGE-QRDAIEETLNALDSGKLRVAERQDSGNWHVNQWAKK 63 Query: 62 AVLLSFRINDNKVMDGAE--TRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIAR 119 AVLL FRI D + G + ++DKV KF + EA +++ GFR VP VR+ A+IA Sbjct: 64 AVLLGFRIKDMEEQSGGPQGSGWWDKVDSKFKGWGEAEWKEAGFRAVPNCVVRKSAYIAP 123 Query: 120 NTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIE 179 VLMPS+VN+GA+VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP+QA PTIIE Sbjct: 124 GVVLMPSFVNLGAHVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIE 183 Query: 180 DNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLP 239 DNCFIGARSEVVEG IV EGSV+ MGV++GQST+I DRETGE+ YG VP SVVV+G++P Sbjct: 184 DNCFIGARSEVVEGCIVREGSVLGMGVFIGQSTKIVDRETGEVMYGEVPPYSVVVAGSMP 243 Query: 240 SKDGSYSLYCAVIVKKVDAKTRGKVGINELLR 271 SK+G +LYCAVIVK+VD +TR K GINELLR Sbjct: 244 SKNG-INLYCAVIVKRVDERTRSKTGINELLR 274 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 260 Number of extensions: 8 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 275 Length adjustment: 25 Effective length of query: 249 Effective length of database: 250 Effective search space: 62250 Effective search space used: 62250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate GFF3576 PGA1_c36310 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase DapD)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.601.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.601.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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