Align Histidine ammonia-lyase (EC 4.3.1.3) (characterized)
to candidate GFF3579 PGA1_c36340 histidine ammonia-lyase HutH
Query= reanno::Phaeo:GFF3579
(507 letters)
>FitnessBrowser__Phaeo:GFF3579
Length = 507
Score = 979 bits (2531), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MIEMIPGTVTLSTLEDIYRNLTPAKLASSAREPVEAAAQMVAEAAAGQEAVYGINTGFGK 60
MIEMIPGTVTLSTLEDIYRNLTPAKLASSAREPVEAAAQMVAEAAAGQEAVYGINTGFGK
Sbjct: 1 MIEMIPGTVTLSTLEDIYRNLTPAKLASSAREPVEAAAQMVAEAAAGQEAVYGINTGFGK 60
Query: 61 LASTKIAPEDTATLQRNLILSHCCGVGEALPEDKTRLMMTLKLLSMGRGASGVRWLVIDQ 120
LASTKIAPEDTATLQRNLILSHCCGVGEALPEDKTRLMMTLKLLSMGRGASGVRWLVIDQ
Sbjct: 61 LASTKIAPEDTATLQRNLILSHCCGVGEALPEDKTRLMMTLKLLSMGRGASGVRWLVIDQ 120
Query: 121 IEKMLAHGVIPVIPSQGSVGASGDLAPLAHMAAAMIGAGEATYDGTRMSSAEALKKAGLE 180
IEKMLAHGVIPVIPSQGSVGASGDLAPLAHMAAAMIGAGEATYDGTRMSSAEALKKAGLE
Sbjct: 121 IEKMLAHGVIPVIPSQGSVGASGDLAPLAHMAAAMIGAGEATYDGTRMSSAEALKKAGLE 180
Query: 181 PIVLGPKEGLGLINGTQFSTACALAGLFDAWRMAEASMTIASLSTDAIMGSTAPLIADIH 240
PIVLGPKEGLGLINGTQFSTACALAGLFDAWRMAEASMTIASLSTDAIMGSTAPLIADIH
Sbjct: 181 PIVLGPKEGLGLINGTQFSTACALAGLFDAWRMAEASMTIASLSTDAIMGSTAPLIADIH 240
Query: 241 TLRGHAGQINVAQQMREIMDGSEIRESHREGDTRVQDPYCIRCQPQVVGAALDVLRMAAK 300
TLRGHAGQINVAQQMREIMDGSEIRESHREGDTRVQDPYCIRCQPQVVGAALDVLRMAAK
Sbjct: 241 TLRGHAGQINVAQQMREIMDGSEIRESHREGDTRVQDPYCIRCQPQVVGAALDVLRMAAK 300
Query: 301 TLEIEANAVTDNPLVLVNEGRIVSGGNFHAEYVGFAADQIALAVAEIGAIAQRRVALMVD 360
TLEIEANAVTDNPLVLVNEGRIVSGGNFHAEYVGFAADQIALAVAEIGAIAQRRVALMVD
Sbjct: 301 TLEIEANAVTDNPLVLVNEGRIVSGGNFHAEYVGFAADQIALAVAEIGAIAQRRVALMVD 360
Query: 361 PTLSHDLPPFLTPDPGLNSGFMIAEVTTAALMSENKHLANPCVTDSTPTSANQEDHVSMA 420
PTLSHDLPPFLTPDPGLNSGFMIAEVTTAALMSENKHLANPCVTDSTPTSANQEDHVSMA
Sbjct: 361 PTLSHDLPPFLTPDPGLNSGFMIAEVTTAALMSENKHLANPCVTDSTPTSANQEDHVSMA 420
Query: 421 AHGALRLARMNANLSVILGVEMLCAAQGVEARAPLQTSARLQDVLGMLRADIPALAEDRY 480
AHGALRLARMNANLSVILGVEMLCAAQGVEARAPLQTSARLQDVLGMLRADIPALAEDRY
Sbjct: 421 AHGALRLARMNANLSVILGVEMLCAAQGVEARAPLQTSARLQDVLGMLRADIPALAEDRY 480
Query: 481 LAPDIEDASAMVRAGRVAEAAGVKVTA 507
LAPDIEDASAMVRAGRVAEAAGVKVTA
Sbjct: 481 LAPDIEDASAMVRAGRVAEAAGVKVTA 507
Lambda K H
0.317 0.131 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 912
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 507
Length adjustment: 34
Effective length of query: 473
Effective length of database: 473
Effective search space: 223729
Effective search space used: 223729
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Align candidate GFF3579 PGA1_c36340 (histidine ammonia-lyase HutH)
to HMM TIGR01225 (hutH: histidine ammonia-lyase (EC 4.3.1.3))
../bin/blast/fastacmd -i /tmp/list.16730.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16730.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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