Alignments for a candidate for trpD_2 in Pseudomonas stutzeri RCH2

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate GFF3581 Psest_3648 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>FitnessBrowser__psRCH2:GFF3581
          Length = 348

 Score =  307 bits (786), Expect = 3e-88
 Identities = 168/337 (49%), Positives = 216/337 (64%), Gaps = 5/337 (1%)

Query: 6   QQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMR 65
           ++AL R +   ++  +EM  +MRQIM G+ +DA V A L G+R+K ETI EI GA  VMR
Sbjct: 4   KEALNRIVGQLDLSTEEMQAVMRQIMTGQCTDAQVGAFLMGMRMKSETIDEIVGAVQVMR 63

Query: 66  EFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSA 125
           E +  V   D   +VD  GTGGDG + FN+ST A FV AA G KVAKHGNR+VS KSGSA
Sbjct: 64  ELAAPVRF-DTDKLVDTCGTGGDGMNIFNVSTAASFVVAAAGGKVAKHGNRAVSGKSGSA 122

Query: 126 DALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL 185
           D LEA G  ++L PEQVA S+   G+GFM+AP HH AMK  A  RRE+G+RT+FNILGP+
Sbjct: 123 DLLEAAGVFLDLTPEQVARSVDTVGVGFMFAPAHHGAMKHAAGPRRELGLRTLFNILGPM 182

Query: 186 TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDG 245
            NPAG  + ++GVF   L    A VL  LG++  LVV  +DG+DE+SL A T V EL+DG
Sbjct: 183 ANPAGVRHQVLGVFSKALCRPMAEVLARLGSKHVLVVHAQDGLDEISLAAPTHVAELKDG 242

Query: 246 QVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPG----PALDIVALNAGAA 301
           ++ EY + PEDFGI   +   L V DA  S A++   L          A D++ LNAGAA
Sbjct: 243 EIREYSIQPEDFGIKSQSLIGLNVEDAQGSLALIRDALGRRQSENGQKAADMIVLNAGAA 302

Query: 302 LYVAGVADSIADGIVRARQVLADGSARACLDAYVAFT 338
           LY A +A S+  G+  A   L+ G AR  L+  V+FT
Sbjct: 303 LYAADLASSLKQGVEMAHDALSTGLARDKLEELVSFT 339


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 348
Length adjustment: 29
Effective length of query: 316
Effective length of database: 319
Effective search space:   100804
Effective search space used:   100804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate GFF3581 Psest_3648 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.26889.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26889.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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