Align Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (characterized)
to candidate GFF3867 PGA1_78p00310 glycine dehydrogenase
Query= reanno::pseudo13_GW456_L13:PfGW456L13_1868
(950 letters)
>FitnessBrowser__Phaeo:GFF3867
Length = 951
Score = 1162 bits (3005), Expect = 0.0
Identities = 564/937 (60%), Positives = 700/937 (74%), Gaps = 7/937 (0%)
Query: 15 RHIGPRAGDEQAMLNSLGFDSLEALSASVIPDSIKGTSVLGLEDGLSEADALALIKSIAT 74
RHIGP + ML +GF++L+ L + +P +I+ T L ++E DAL +K IA
Sbjct: 17 RHIGPSPREMADMLKVIGFNTLDELIDATVPPAIRQTEALDWGPAMTERDALFHMKEIAG 76
Query: 75 KNQLFKTFIGQGYYGTHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLISD 134
KN++ + IGQGY+GT TP+PILRN+LENPAWYTAYTPYQPEISQGRLEALLNFQT++SD
Sbjct: 77 KNKVLTSLIGQGYHGTTTPAPILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVSD 136
Query: 135 LTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHA-FFASVHCHPQTLDVLRTRAEPLG 193
LTGLP+ANASLLDEATAAAEAM R S++K ++A FF +CHPQT+ V++TRAEPLG
Sbjct: 137 LTGLPVANASLLDEATAAAEAMAMAHRGSRSKANNAAFFVDKNCHPQTVAVIKTRAEPLG 196
Query: 194 IDVVVGDERELTDVTPFFGALLQYPASNGDVFDYRELTERFHAANALVAVAADLLALTVL 253
IDVVV + EL D FGA+ QYP ++G V D+ + H + VAAD+L+L +L
Sbjct: 197 IDVVVAEPTEL-DAGAVFGAIFQYPGTHGHVTDFSDQIAALHEHKGIAVVAADILSLALL 255
Query: 254 TAPGEFGADVAIGSAQRFGVPLGFGGPHAAYFSTKDAFKRDMPGRLVGVSVDRFGNPALR 313
+PGE GAD+AIGS QRFGVP+G+GGPHAAY +T D KR MPGR++GVS+D GN A R
Sbjct: 256 KSPGEMGADIAIGSTQRFGVPMGYGGPHAAYMATSDKLKRSMPGRIIGVSIDARGNKAYR 315
Query: 314 LAMQTREQHIRREKATSNICTAQVLLANIASMYAVYHGPKGLTQIANRVHHLTAILAKGL 373
L++QTREQHIRREKA SN+CTAQ LLA IASMYAVYHGP G+ IA VH TA LA GL
Sbjct: 316 LSLQTREQHIRREKANSNVCTAQALLAVIASMYAVYHGPDGIKAIAQSVHRKTARLAAGL 375
Query: 374 SALGLSVEQASFFDTLTVKAGAQTAALHDKAHAQRINLRVVDGERLGLSLDETTTQADVE 433
G VE FFDT+TV+ G + + A + INLR V ++G+SLDE T +E
Sbjct: 376 EEAGFKVEPEVFFDTITVEVGHLQKTVMEAAVQRGINLRRVGETKVGISLDEQTRPETIE 435
Query: 434 TLWSLLSDGKALPDFAALAASVQSAIPATLVRQSPILSHPVFNRYHSETELMRYLRKLAD 493
+W D +++ Q +P ++R S L+HP+F++ +E E+ RY+R+LAD
Sbjct: 436 AVWGAFGI-----DRKDDSSNKQYRLPEAMLRDSAYLTHPIFHKNRAEAEITRYMRRLAD 490
Query: 494 KDLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGALHPFAPAEQSAGYQQLTDELEAMLC 553
+DLALDR MIPLGSCTMKLNA EMIPVTW EF LHPF P +Q+ GY Q+ D+L LC
Sbjct: 491 RDLALDRAMIPLGSCTMKLNATIEMIPVTWPEFSNLHPFVPEDQAQGYHQMIDDLNDKLC 550
Query: 554 AATGYDSVSLQPNAGSQGEYAGLLAIRAYHQSRGEDRRDICLIPSSAHGTNPATAQMAGM 613
TGYD++S QPN+G+QGEYAGLL IR YH SRG+ R++CLIP+SAHGTNPA+AQM G
Sbjct: 551 QITGYDAISQQPNSGAQGEYAGLLTIRNYHASRGQAHRNVCLIPTSAHGTNPASAQMVGW 610
Query: 614 RVVVTACDARGNVDIEDLRAKAIEHREHLAALMITYPSTHGVFEEGIREICGIIHDNGGQ 673
+VV D GN+D+ D R KA +H +HLA MITYPSTHGVFE ++E+C I HD+GGQ
Sbjct: 611 KVVPIKADDNGNIDVADFREKAEKHSDHLAGCMITYPSTHGVFETTVQEVCQITHDHGGQ 670
Query: 674 VYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPIGVKSHLAPFLPGH 733
VYIDGANMNAMVG+ PG GGDVSHLNLHKTFCIPHGGGGPG+GPIGVK+HL LPGH
Sbjct: 671 VYIDGANMNAMVGVSRPGDIGGDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLTEHLPGH 730
Query: 734 AQMERKEGAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNANYISRRLEEHYPV 793
+ G V AAPFGS SILP++W YI +MGG+GL +A+++AILNANYI+ RL++ YP+
Sbjct: 731 PEYGTAVGPVSAAPFGSPSILPVSWAYILLMGGSGLTQATKVAILNANYIAARLQDAYPI 790
Query: 794 LYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTES 853
LYT +G VAHECILD RPL D +G+SVDDVAKRLID GFHAPTMS+PVAGTLM+EPTES
Sbjct: 791 LYTSESGRVAHECILDTRPLNDEAGVSVDDVAKRLIDSGFHAPTMSWPVAGTLMVEPTES 850
Query: 854 ESKEELDRFCDAMIRIREEIRAVENGTLDKDDNPLKNAPHTAKELVGEWSHPYSREQAVY 913
E K+ELDRFC+AM+ IR E + + +G +D ++NPLK+APHT ++LVGEW PYSREQA +
Sbjct: 851 EPKDELDRFCEAMLSIRSEAQDIIDGKIDAENNPLKHAPHTVRDLVGEWDRPYSREQACF 910
Query: 914 PVASLIEGKYWPPVGRVDNVFGDRNLVCACPSIESYA 950
P +L KYWP V RVDN +GDRNL+C CP +E YA
Sbjct: 911 PPGNLGVDKYWPAVNRVDNAYGDRNLICTCPPMEDYA 947
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2266
Number of extensions: 94
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 950
Length of database: 951
Length adjustment: 44
Effective length of query: 906
Effective length of database: 907
Effective search space: 821742
Effective search space used: 821742
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Align candidate GFF3867 PGA1_78p00310 (glycine dehydrogenase)
to HMM TIGR00461 (gcvP: glycine dehydrogenase (EC 1.4.4.2))
../bin/blast/fastacmd -i /tmp/list.7884.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7884.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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