Alignments for a candidate for cysK in Pseudomonas simiae WCS417

Align Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 (characterized)
to candidate GFF3937 PS417_20160 cysteine synthase

Query= SwissProt::P16703
         (303 letters)



>FitnessBrowser__WCS417:GFF3937
          Length = 300

 Score =  416 bits (1068), Expect = e-121
 Identities = 208/292 (71%), Positives = 241/292 (82%)

Query: 3   TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
           T+   +GNTPLV+LQRM  D  + + LKLEGNNPAGSVKDR ALSMI  AE RG+IKPGD
Sbjct: 7   TIADCVGNTPLVRLQRMAGDTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIKPGD 66

Query: 63  VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
            LIEATSGNTGIALAM AA+KGY+M L+MPDN S ER+AAM AYGA+LILVT+E GMEGA
Sbjct: 67  TLIEATSGNTGIALAMAAAIKGYKMILIMPDNGSAERKAAMTAYGAQLILVTQEDGMEGA 126

Query: 123 RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGV 182
           RDLA  MA  G G +LDQF N DNP AHYT+TGPEIW+QT G ITHFVSSMGTTGTI G 
Sbjct: 127 RDLAERMAAEGRGLVLDQFANGDNPEAHYTSTGPEIWRQTQGTITHFVSSMGTTGTIMGN 186

Query: 183 SRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMR 242
           SR+++EQ+  + IVGLQP EGS+IPGIRRWP EYLP I+N+S VD ++D+ QR+AE+T R
Sbjct: 187 SRYLKEQNPAIQIVGLQPMEGSAIPGIRRWPEEYLPKIYNSSRVDRIIDMAQREAEDTTR 246

Query: 243 ELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAIICDRGDRYLSTGVFGE 294
            LA  EGIFCGVSSGGAVAG LR++K   +AV+VAIICDRGDRYLSTG+F E
Sbjct: 247 RLAREEGIFCGVSSGGAVAGMLRLSKEVENAVIVAIICDRGDRYLSTGIFDE 298


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 371
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 300
Length adjustment: 27
Effective length of query: 276
Effective length of database: 273
Effective search space:    75348
Effective search space used:    75348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate GFF3937 PS417_20160 (cysteine synthase)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.22026.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22026.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.