Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate GFF4653 PS417_23810 acetolactate synthase 3 catalytic subunit
Query= BRENDA::P00893 (574 letters) >FitnessBrowser__WCS417:GFF4653 Length = 574 Score = 753 bits (1945), Expect = 0.0 Identities = 365/576 (63%), Positives = 445/576 (77%), Gaps = 4/576 (0%) Query: 1 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG 60 ME+LSG EM+VR L D+GV ++GYPGGA+L +YDAL + H+LVRHEQAA HMADG Sbjct: 1 MELLSGGEMLVRFLRDEGVDYIYGYPGGALLHVYDALFKEPAVTHILVRHEQAATHMADG 60 Query: 61 LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG 120 ARATG+ GVVLVTSGPGATNAITGIATAYMDSIP+V++SGQV ++++G DAFQE DM+G Sbjct: 61 YARATGKAGVVLVTSGPGATNAITGIATAYMDSIPMVIISGQVPSTMVGTDAFQETDMIG 120 Query: 121 ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV 180 ISRP+VKHSF++K +IP+V+KKAF+LA SGRPGPVVVD+PKD+ NPA K Y++P+ Sbjct: 121 ISRPIVKHSFMIKHPSEIPEVMKKAFYLAQSGRPGPVVVDVPKDMTNPAEKFEYIFPKKA 180 Query: 181 SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCS 240 +RSY+P GH GQI++A + L+AAK+PV+Y GGG I G L E + LNLPV + Sbjct: 181 KLRSYSPAVRGHSGQIRKAAEMLLAAKRPVLYSGGGVILGGGSAPLTELAKLLNLPVTNT 240 Query: 241 LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV 300 LMGLGAFP T RQ +GMLGMHG+Y AN+ MH+ADVI AVG RFDDR N +K+CPNA + Sbjct: 241 LMGLGAFPGTDRQFVGMLGMHGSYTANLAMHHADVILAVGARFDDRVINGASKFCPNAKI 300 Query: 301 LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRA- 359 +HIDIDP SISKT+ AD+PIVG VL +M+ L + + WW+QI++WR Sbjct: 301 IHIDIDPASISKTIKADVPIVGPVESVLTEMVAALKDIGETPNKESVASWWKQIDEWRGD 360 Query: 360 RQCLKYDT-HSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSG 418 R YD IKPQ VIETL +TKGDA+VTSDVGQHQMFAA YY FDKP RWINSG Sbjct: 361 RGLFPYDKGDGSIIKPQTVIETLCEVTKGDAFVTSDVGQHQMFAAQYYKFDKPNRWINSG 420 Query: 419 GLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYL 478 GLGTMGFG PAA+GVK++ P+ V CVTG+GSIQMNIQELST LQY LPV +V LNN L Sbjct: 421 GLGTMGFGFPAAMGVKLSFPDTDVACVTGEGSIQMNIQELSTCLQYGLPVKIVCLNNGVL 480 Query: 479 GMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNN 538 GMV+QWQDM Y+ RHS SYM+SLPDFV+L EAYGHVGI+I+ +L+ K+ EA + Sbjct: 481 GMVRQWQDMSYNSRHSHSYMESLPDFVKLVEAYGHVGIRITDLKDLKPKMEEAF--AMKD 538 Query: 539 RLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574 RLVF+D+ VD SEHVYPMQI+ G M +MWL+KTERT Sbjct: 539 RLVFIDIQVDTSEHVYPMQIKDGSMRDMWLNKTERT 574 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1027 Number of extensions: 36 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 574 Length of database: 574 Length adjustment: 36 Effective length of query: 538 Effective length of database: 538 Effective search space: 289444 Effective search space used: 289444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate GFF4653 PS417_23810 (acetolactate synthase 3 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.26808.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26808.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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