Alignments for a candidate for lysA in Pseudomonas simiae WCS417

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate GFF5387 PS417_27580 diaminopimelate decarboxylase

Query= BRENDA::Q9KVL7
         (417 letters)



>FitnessBrowser__WCS417:GFF5387
          Length = 415

 Score =  546 bits (1408), Expect = e-160
 Identities = 271/417 (64%), Positives = 335/417 (80%), Gaps = 2/417 (0%)

Query: 1   MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAV 60
           MD FNY+ DG+L+AE V L+ +A ++GTP YVYSRA +E  + +F  ++    HL+CYAV
Sbjct: 1   MDAFNYR-DGELFAEGVALSAIAQRFGTPTYVYSRAHIEAQYRSFTDALDGVSHLVCYAV 59

Query: 61  KANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKI 120
           KANSNLGVLN LARLG+GFDIVS GELERVLAAGG   K+VFSGVGKT  +M+RAL++ +
Sbjct: 60  KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGV 119

Query: 121 KCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAA 180
            CFN+ES  EL+RL  VA E+GV+APISLR+NPDVDA THPYISTGL++NKFGI    A 
Sbjct: 120 HCFNIESTDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAE 179

Query: 181 QVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 240
            VY  A  LPNL+V G+DCHIGSQLT L PF+DA DRLLALID L   GI++ H+D+GGG
Sbjct: 180 DVYIRAAQLPNLEVLGVDCHIGSQLTTLPPFLDALDRLLALIDRLGECGIYLHHIDLGGG 239

Query: 241 LGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHK 300
           +GV YRDE PP  ++Y KA+ +R+E  RDL L+FEPGR I ANAGVL+T+VE+LKHTEHK
Sbjct: 240 VGVRYRDEEPPLIADYIKAVRERIE-GRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEHK 298

Query: 301 NFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQE 360
           +FAI+DAAMNDLIRPALYQAW ++  + PR  EA+ YD+VGP+CET DFL KDR L L+E
Sbjct: 299 DFAIVDAAMNDLIRPALYQAWMNVTAVTPRASEARAYDIVGPICETGDFLAKDRQLALEE 358

Query: 361 GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLPE 417
           GDLLA+ S+GAYGF MSSNYNTR R AEV+VDG++ + VR+RE ++ L+A ES+LPE
Sbjct: 359 GDLLAIHSAGAYGFVMSSNYNTRGRTAEVLVDGDQAFEVRRRETVAELYAGESLLPE 415


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 523
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 415
Length adjustment: 31
Effective length of query: 386
Effective length of database: 384
Effective search space:   148224
Effective search space used:   148224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate GFF5387 PS417_27580 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.20044.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20044.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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