Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate GFF871 PS417_04420 histidinol dehydrogenase
Query= BRENDA::Q8G2R2 (430 letters) >FitnessBrowser__WCS417:GFF871 Length = 440 Score = 399 bits (1026), Expect = e-116 Identities = 211/428 (49%), Positives = 281/428 (65%), Gaps = 1/428 (0%) Query: 2 VTTLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDL 61 + L DPDF LS + + V+ V +I+ VR GD+AL+D++R+FD +D+ Sbjct: 7 IARLNAADPDFAHHLDHLLSWESVSDDSVNGRVLDIIKAVRERGDAALVDFTRQFDGLDV 66 Query: 62 EKTGIAVTEAE-IDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSR 120 + E ++ A A EAL++A R+ +H +Q YT+A G LG + Sbjct: 67 ASMSDLILPRERLELALTRITAPQREALEVAAARVRSYHEKQKQDSWSYTEADGTVLGQK 126 Query: 121 WTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAG 180 T ++ GLYVPGG ASYPSSVLMNA+PAKVAGV +VMVVP P G +N LVL AA +AG Sbjct: 127 VTPLDRAGLYVPGGKASYPSSVLMNAIPAKVAGVTEVVMVVPTPRGEINELVLAAACIAG 186 Query: 181 VSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVL 240 V ++ +GGAQA+AALAYGTE++ V K+VGPGN YVA AKR VFG VGIDMIAGPSE+L Sbjct: 187 VDRVFTIGGAQAVAALAYGTESVPKVDKVVGPGNIYVATAKRHVFGQVGIDMIAGPSEIL 246 Query: 241 IVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASA 300 +V D +PDWIA DL +QAEHD AQ+IL++ D F V ++ + L T+ R E Sbjct: 247 VVCDGQTDPDWIAMDLFSQAEHDEDAQAILVSPDAEFLDKVAASINKLLPTMDRAEIIEK 306 Query: 301 SWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIG 360 S GA+ILV+D E AI +ANRIA EHLE++VAD +A++P IR+AG+IF+G +T E +G Sbjct: 307 SINGRGALILVRDMEQAIEVANRIAPEHLELSVADPQAWLPSIRHAGAIFMGRHTSEALG 366 Query: 361 DYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAH 420 DY G NHVLPT+ +ARFSS L V D+ KR+S++ + LG A +AR E L AH Sbjct: 367 DYCAGPNHVLPTSGTARFSSPLGVYDFQKRSSIIFCSPQGASELGKTASVLARGESLSAH 426 Query: 421 AQSVAIRL 428 A+S R+ Sbjct: 427 ARSAEYRI 434 Lambda K H 0.318 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 494 Number of extensions: 26 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 440 Length adjustment: 32 Effective length of query: 398 Effective length of database: 408 Effective search space: 162384 Effective search space used: 162384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate GFF871 PS417_04420 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))
../bin/blast/fastacmd -i /tmp/list.6386.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6386.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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