Align histidinol-phosphate aminotransferase (EC 2.6.1.9) (characterized)
to candidate GFF872 PS417_04425 histidinol-phosphate aminotransferase
Query= reanno::pseudo6_N2E2:Pf6N2E2_3251
(350 letters)
>FitnessBrowser__WCS417:GFF872
Length = 350
Score = 624 bits (1609), Expect = 0.0
Identities = 309/350 (88%), Positives = 329/350 (94%)
Query: 1 MSKFWSPFVKNLVPYVPGEQPKLTRLVKLNTNENPYGPSPKALAAMQTELNDNLRLYPDP 60
MSKFWSPFVK+LVPYVPGEQPKLT+LVKLNTNENPYGPSPKALAAMQ ELNDNLRLYPDP
Sbjct: 1 MSKFWSPFVKDLVPYVPGEQPKLTKLVKLNTNENPYGPSPKALAAMQAELNDNLRLYPDP 60
Query: 61 NSDLLKGAVARYYGVQSNQVFLGNGSDEVLAHIFHGLLQHDQPLLFPDISYSFYPVYCGL 120
NSDLLK AVA+YYG+ + +VFLGNGSDEVLAHIFHGL QHD PLLFPDISYSFYPVYCGL
Sbjct: 61 NSDLLKQAVAKYYGIDAGKVFLGNGSDEVLAHIFHGLFQHDLPLLFPDISYSFYPVYCGL 120
Query: 121 YGIQFDAVPLDAQFQIDPADYAKPNGGIIFPNPNAPTGCLLALEAVEQILKANPDSVVVV 180
YGIQ D VPLD QFQI ADYAKPNGGIIFPNPNAPTG +LAL+AVEQILKA+PDSVVVV
Sbjct: 121 YGIQSDPVPLDEQFQIRVADYAKPNGGIIFPNPNAPTGTVLALDAVEQILKASPDSVVVV 180
Query: 181 DEAYIDFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPELIEALERIKNSFN 240
DEAYIDFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHP+LIEALER+KNSFN
Sbjct: 181 DEAYIDFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERVKNSFN 240
Query: 241 SYPLDRLANVGGAAAFDDREYFDRTCRLVIEHREWVVAQLQAKGFEVLPSAANFIFARHP 300
SYPLDRLA VG AAAF+DREYF++TC+ VI+ R +VAQL+ KGFEVLPSAANFIFARHP
Sbjct: 241 SYPLDRLAIVGAAAAFEDREYFEKTCQWVIDSRNTLVAQLEEKGFEVLPSAANFIFARHP 300
Query: 301 RHDAAGLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALIEALGEL 350
+DAAGLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALI+ LGEL
Sbjct: 301 EYDAAGLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALIDGLGEL 350
Lambda K H
0.320 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 565
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 350
Length adjustment: 29
Effective length of query: 321
Effective length of database: 321
Effective search space: 103041
Effective search space used: 103041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
Align candidate GFF872 PS417_04425 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))
../bin/blast/fastacmd -i /tmp/list.31279.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31279.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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