Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate GFF908 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF
Query= BRENDA::Q5NMD6 (255 letters) >FitnessBrowser__Phaeo:GFF908 Length = 253 Score = 343 bits (880), Expect = 2e-99 Identities = 171/250 (68%), Positives = 206/250 (82%), Gaps = 1/250 (0%) Query: 3 LCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGT 62 L TRIIPCLDVADGRVVKGVNF L DAGDPVE AK YDAAGADE+CFLDI A+HE RGT Sbjct: 2 LKTRIIPCLDVADGRVVKGVNFVGLRDAGDPVEAAKAYDAAGADEICFLDIHATHENRGT 61 Query: 63 MLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFG 122 M D+V RTAE CF+PLTVGGGVR ED RALLLAGADKV+ NSAAVA P+++ E AD+FG Sbjct: 62 MFDMVRRTAEQCFVPLTVGGGVRTKEDVRALLLAGADKVSFNSAAVANPDVIREAADQFG 121 Query: 123 AQCVVAAIDARRNG-DHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTRD 181 +QC V AIDA+ WE++THGGRR TGI+A++ A + GAGEILLTSMD+DGT+ Sbjct: 122 SQCTVCAIDAKTVAPGKWEIFTHGGRRETGIDAVEFARLVVAKGAGEILLTSMDRDGTKS 181 Query: 182 GYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAHE 241 G++L LTR ++D+V VPVIASGGVG LDH+VEGVT+G ASA+LAASIFHFG++++ EA + Sbjct: 182 GFNLPLTRAISDAVDVPVIASGGVGTLDHLVEGVTEGGASAVLAASIFHFGEFTVQEAKQ 241 Query: 242 ALAKAGLTVR 251 +A AG+ +R Sbjct: 242 HMAAAGIPMR 251 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 294 Number of extensions: 8 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 253 Length adjustment: 24 Effective length of query: 231 Effective length of database: 229 Effective search space: 52899 Effective search space used: 52899 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate GFF908 PGA1_c09240 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.29249.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29249.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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