Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate GFF911 PGA1_c09270 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA
Query= reanno::Smeli:SMc02570 (247 letters) >FitnessBrowser__Phaeo:GFF911 Length = 240 Score = 288 bits (737), Expect = 7e-83 Identities = 152/240 (63%), Positives = 183/240 (76%), Gaps = 1/240 (0%) Query: 1 MILFPAIDLKDGQCVRLKLGDMEQATVYNPDPAAQARAFEEQGFEWLHVVDLNGAFAGET 60 MIL+PAIDLKDGQ VRL GDME+ TV+N DPAAQA F E G +WLH+VDLNGAFAGE Sbjct: 1 MILYPAIDLKDGQAVRLLHGDMEKTTVFNDDPAAQALEFVEAGCDWLHLVDLNGAFAGEP 60 Query: 61 VNGAAVDAILKATKNPVQLGGGIRTLEHIENWLSRGLKRVILGTVAVRDPALVIEACRKF 120 VN A V+ ILK K P QLGGGIR + IE W+ +GL RVILGTVAV +P LV EA R F Sbjct: 61 VNAAPVEKILKRCKVPAQLGGGIRDMATIERWIDKGLARVILGTVAVENPDLVREAARAF 120 Query: 121 PGRVAVGIDAKGGKVAVEGWAEASELGVVELARKFEGAGVAAIIYTDIDRDGILTGINWA 180 PG+VAVGIDA+ G+VA +GWAE +++ V +LA+ FE AGVAAIIYTDI RDG + G N Sbjct: 121 PGKVAVGIDARNGRVATKGWAEETDVMVTDLAKSFEDAGVAAIIYTDILRDGAMKGPNVE 180 Query: 181 STLELADAVSIPVIASGGLASMDDIRRMTEPDAQKLEGAISGRALYDGRIDPKEALDLIR 240 +T LA+AVSIPVIASGG++S+ D++ + A L GAISGRALYDG ID EAL +++ Sbjct: 181 ATAALANAVSIPVIASGGVSSLADLQALKSCGA-PLNGAISGRALYDGAIDLGEALKILK 239 Lambda K H 0.319 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 257 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 247 Length of database: 240 Length adjustment: 23 Effective length of query: 224 Effective length of database: 217 Effective search space: 48608 Effective search space used: 48608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 46 (22.3 bits)
Align candidate GFF911 PGA1_c09270 (1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))
../bin/blast/fastacmd -i /tmp/list.14613.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14613.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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