Alignments for a candidate for argH in Paraburkholderia bryophila 376MFSha3.1

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate H281DRAFT_00194 H281DRAFT_00194 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>FitnessBrowser__Burk376:H281DRAFT_00194
          Length = 468

 Score =  432 bits (1110), Expect = e-125
 Identities = 232/462 (50%), Positives = 302/462 (65%), Gaps = 5/462 (1%)

Query: 3   KEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLV 62
           K + WS RF   +   + R+ +S+ FD  L   D+ GS AHA ML    II++E+   + 
Sbjct: 8   KGEAWSARFSEPMSELVKRYTSSVFFDKRLALVDIEGSLAHASMLGAQKIIAAEDLAAIQ 67

Query: 63  AGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLY 122
            G+ QI+ E  +G+F   +D EDVH  +E RLT ++GD GK+LHT RSRNDQV TD RL+
Sbjct: 68  RGMAQIKGEIERGEFEWQLDLEDVHLNIEARLTALIGDAGKRLHTGRSRNDQVATDIRLW 127

Query: 123 LRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDW 182
           LR +I +I   L+E +  LLD+AEK+  T++PG+THLQ AQPV+  HHLLAY +M  RD 
Sbjct: 128 LRGEIDRIGGLLKELRTALLDMAEKNASTIMPGFTHLQVAQPVTFGHHLLAYVEMFSRDA 187

Query: 183 ERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLC 242
           ER+ D  +RVN  PLG  ALAGT++PIDRH  AK L FD I ANSLD VSDRDFAIEF  
Sbjct: 188 ERMLDCRKRVNRLPLGAAALAGTSYPIDRHAVAKTLGFDGICANSLDAVSDRDFAIEFTA 247

Query: 243 AASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVF 302
           A++L+M H+SR +EE++LW S    F+ L D   TGSSIMPQKKNPDVPEL RGKTGRV 
Sbjct: 248 ASALVMTHISRFSEELVLWMSPRVGFIDLADRFCTGSSIMPQKKNPDVPELARGKTGRVN 307

Query: 303 GHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQA 362
           GHL A+L +MKG PLAYNKD QEDKE LFD+V+TV  +L     ++  G+  + Q +  A
Sbjct: 308 GHLMALLTLMKGQPLAYNKDNQEDKEPLFDTVDTVADTLRIFAEMV-AGISVKPQAMRDA 366

Query: 363 VTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFA- 421
             + FS ATD+ADYL  RG+ FR+A+  V   V+     G  L DL L+E +   P  A 
Sbjct: 367 ALQGFSTATDLADYLVKRGLAFRDAHEAVALAVRICADRGCDLADLTLDEMRAELPNVAH 426

Query: 422 ---ADIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQID 460
               D++  ++    VA+RN  GGT   QV  A+ AAR  ++
Sbjct: 427 LIGDDVFSYLTLEGSVASRNHPGGTAPEQVLAAVKAARQALN 468


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 544
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 468
Length adjustment: 33
Effective length of query: 428
Effective length of database: 435
Effective search space:   186180
Effective search space used:   186180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate H281DRAFT_00194 H281DRAFT_00194 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.14377.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14377.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.