Alignments for a candidate for argE in Paraburkholderia bryophila 376MFSha3.1

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate H281DRAFT_00879 H281DRAFT_00879 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__Burk376:H281DRAFT_00879
          Length = 416

 Score =  262 bits (669), Expect = 1e-74
 Identities = 145/364 (39%), Positives = 210/364 (57%), Gaps = 11/364 (3%)

Query: 9   KLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEAR---GYI 65
           +LV   +V   PN  ++  +R  L + GI   +     G  +N+FATI   +     G +
Sbjct: 35  RLVSMDTVSRNPNLGLIETVRDELRALGIEGTLTHDASGKWANLFATIPAHDGETNGGVV 94

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVVP     W SDPF+  +  D+LYGRGT DMKGF+ A LA VP +    L +P+
Sbjct: 95  LSGHTDVVPVDGQQWDSDPFKPEIRGDKLYGRGTCDMKGFIGAALALVPDMQRTKLAKPI 154

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
           H ALS+DEE GC G P +IA L +   +P G I+GEPT MR I AHKG  A +  VRG++
Sbjct: 155 HFALSFDEEVGCAGAPLLIADLMKRGVKPDGCIVGEPTSMRPIVAHKGINAYQCCVRGQA 214

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKGGQAVNI 244
            HSS   +GLNAI   A ++      AD+    GPF+ +++ P+++ Q  T+ GG A+N 
Sbjct: 215 AHSSLTPKGLNAIEYAARLICYIRDMADQFREQGPFDELYDVPFTTAQTSTIVGGNAINT 274

Query: 245 IPDSCEVEFEARAISGVDPAELLAPVRKTA-EALTTLGFE------VEWQELSAYPALSL 297
           +P  C+ +FE R +  +DP  + A + + A E L            +E  +++A P L  
Sbjct: 275 VPAECKFQFEFRNLPTLDPEPIFARIDQYARETLLPKMLREHPLAAIEITKIAAAPGLDS 334

Query: 298 EPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDE 357
              A +  L+  LT  +    V+YGTEAGLF  AGI +I+CGPGDI +AHK +E++ +D+
Sbjct: 335 SEQAAITQLVRALTADQDKRKVAYGTEAGLFSLAGIPSIVCGPGDIQQAHKANEFVALDQ 394

Query: 358 LMAC 361
           L+ C
Sbjct: 395 LVQC 398


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 376
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 416
Length adjustment: 31
Effective length of query: 343
Effective length of database: 385
Effective search space:   132055
Effective search space used:   132055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate H281DRAFT_00879 H281DRAFT_00879 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.8736.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8736.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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