Alignments for a candidate for argB in Paraburkholderia bryophila 376MFSha3.1

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate H281DRAFT_02211 H281DRAFT_02211 N-acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>FitnessBrowser__Burk376:H281DRAFT_02211
          Length = 299

 Score =  332 bits (851), Expect = 6e-96
 Identities = 170/285 (59%), Positives = 214/285 (75%), Gaps = 5/285 (1%)

Query: 12  AKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQ 71
           A++L+EALPYIR++ GKT+VIKYGGNAM  E LK GFARDV+L+K VGINPV+VHGGGPQ
Sbjct: 16  AEILAEALPYIRQYHGKTVVIKYGGNAMTEERLKQGFARDVILLKLVGINPVIVHGGGPQ 75

Query: 72  IGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDA 131
           I   LK++  +  FI GMRVTD  TM+VVE VLGG+V +DIV LIN  GG A+GLTGKD 
Sbjct: 76  IDQALKKVGKQGTFIQGMRVTDEETMEVVEWVLGGEVQQDIVTLINHFGGHAVGLTGKDG 135

Query: 132 ELIRAKKLTVTRQTPEMTKP-EIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSN 190
            LI A+K+ +    P+   P + +DIG VGEV  +N  ++  L    FIPVI+PIG G +
Sbjct: 136 GLIHARKMLM----PDRDNPGQYVDIGQVGEVEAINPAVVKALQDDAFIPVISPIGFGED 191

Query: 191 GESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYG 250
           G SYNINADLVAGK+A  L AEKL+++TNI G+MDK+G +LT LS  +++ L ADGTI G
Sbjct: 192 GLSYNINADLVAGKLAVVLNAEKLVMMTNIPGVMDKEGNLLTDLSAREIDGLFADGTISG 251

Query: 251 GMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295
           GMLPKI  AL+A + GV S HIIDGR+ ++VLLEI T+   GT+I
Sbjct: 252 GMLPKISSALDAAKSGVRSVHIIDGRIEHSVLLEILTEQPFGTMI 296


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 324
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 299
Length adjustment: 27
Effective length of query: 274
Effective length of database: 272
Effective search space:    74528
Effective search space used:    74528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate H281DRAFT_02211 H281DRAFT_02211 (N-acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.19862.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19862.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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