Alignments for a candidate for argC in Paraburkholderia bryophila 376MFSha3.1

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate H281DRAFT_02654 H281DRAFT_02654 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Smeli:SMc01801
         (310 letters)



>FitnessBrowser__Burk376:H281DRAFT_02654
          Length = 309

 Score =  313 bits (801), Expect = 4e-90
 Identities = 161/308 (52%), Positives = 209/308 (67%), Gaps = 5/308 (1%)

Query: 3   PKIFIDGEHGTTGLQIRVRMAGRTDLELLSIPEAERRNAAMREDLLNSADIAILCLPDDA 62
           P IFIDG+ GTTGLQI  R+  RTD+ + ++  AER++A +R + +N+ DIAILCLPD A
Sbjct: 4   PVIFIDGDQGTTGLQIHERLRNRTDITVFTLAAAERKDARLRAEAINACDIAILCLPDAA 63

Query: 63  SREAVAMVAGNNRVRIIDTSTAHRVAPDWAYGFAEMDKAQPQRIRDARHVANPGCYPTGA 122
           +REAV  +  N  VR+ID S+AHR    W YGF EM   Q +RI  AR V NPGCYPTGA
Sbjct: 64  AREAVNAIV-NPAVRVIDASSAHRTQTGWTYGFPEMTSGQRERIASARRVTNPGCYPTGA 122

Query: 123 IALIRPLRQAGILPDGYPVTVNAVSGYTGGGKQMIAQMEDDQNPDHIGAPHF-LYGLTLK 181
           I L+RPL QAG++PD YP++++AVSGY+G G+   A +E+ + PD I AP F +YGL L 
Sbjct: 123 IGLLRPLLQAGLIPDNYPISIHAVSGYSGRGR---AGVEEHEGPDAINAPSFQVYGLDLA 179

Query: 182 HKHVPEMKMHGLLERAPVFSPSVGKFAQGMIVQVPLYLEDLAAGATLETIHRALVDHYAG 241
           HKH PE++ H LL + P+F P+ G F QG+++ VPL L  LA G    T+H  L  HYA 
Sbjct: 180 HKHTPEIQQHALLAQRPIFVPAYGAFRQGIVLTVPLQLRLLAPGVDGATLHTCLARHYAE 239

Query: 242 QSIVEVVPLDESAKLARIDATELAGSDAMKLFVFGTKGGAHVNLVALLDNLGKGASGAAV 301
            + V VVPL ES     +D   L G++ M+L VF      HV L A+ DNLGKGASGAAV
Sbjct: 240 AAHVRVVPLHESCAEKHLDPQVLNGTNDMRLSVFPAVDHGHVLLSAVFDNLGKGASGAAV 299

Query: 302 QNMDLMLS 309
           QN++LML+
Sbjct: 300 QNLNLMLT 307


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 327
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 309
Length adjustment: 27
Effective length of query: 283
Effective length of database: 282
Effective search space:    79806
Effective search space used:    79806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate H281DRAFT_02654 H281DRAFT_02654 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.16095.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16095.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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