Alignments for a candidate for argG in Paraburkholderia bryophila 376MFSha3.1

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate H281DRAFT_04120 H281DRAFT_04120 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>FitnessBrowser__Burk376:H281DRAFT_04120
          Length = 408

 Score =  491 bits (1263), Expect = e-143
 Identities = 242/401 (60%), Positives = 304/401 (75%), Gaps = 6/401 (1%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIAL-- 59
           K+VLAYSGGLDTS+ILKWL++ Y AEV+ FTADIGQGEE+E AR+KAL+ G  +      
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDNYDAEVVTFTADIGQGEELEPARKKALQLGIKQENIFIE 65

Query: 60  DLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119
           DL+EEFVRDFVFPM RA  +YEG YLLGTSIARPLIAK  + IA   GAEA++HGATGKG
Sbjct: 66  DLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQIEIARATGAEAVSHGATGKG 125

Query: 120 NDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK---PYSMDA 176
           NDQVRFEL  YAL+P IKVIAPWREW    R++++AYAE  GIP+ +  ++   PYSMDA
Sbjct: 126 NDQVRFELGYYALEPGIKVIAPWREWDLLSREKLLAYAEKAGIPIEMKHKQGGAPYSMDA 185

Query: 177 NLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPA 236
           NLLHIS+EG  LEDP AE    M+R T  PE+APD  EYV++E+  GDPVA+NG+RLS A
Sbjct: 186 NLLHISFEGRHLEDPKAEAEADMWRWTVSPEQAPDQAEYVDIEYEHGDPVALNGKRLSAA 245

Query: 237 ALLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLH 296
            +L  LN +GG+HG+GR+D+VENR+VGMKSRG YETPGGTI+  A R +ES+TLDREV H
Sbjct: 246 EMLTELNRLGGKHGIGRLDLVENRYVGMKSRGCYETPGGTIMLKAHRGIESITLDREVAH 305

Query: 297 QRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKS 356
            +D L  +YA L+Y G+W++PER A+Q   DH    V G  RLKLYKG+V VV R + ++
Sbjct: 306 LKDDLMARYASLIYNGYWWSPERRAIQVLIDHTQEKVNGWVRLKLYKGSVSVVARDSKET 365

Query: 357 LYRQDLVSFDEAGG-YDQKDAEGFIKIQALRLRVRALVERE 396
           L+ + + +FD+ GG Y+Q DA GFIK+ ALR+R+     R+
Sbjct: 366 LFDKTIATFDDDGGAYNQADAGGFIKLNALRMRIAENARRQ 406


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 540
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 408
Length adjustment: 31
Effective length of query: 369
Effective length of database: 377
Effective search space:   139113
Effective search space used:   139113
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate H281DRAFT_04120 H281DRAFT_04120 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.26338.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26338.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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