Alignments for a candidate for argE in Paraburkholderia bryophila 376MFSha3.1

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate H281DRAFT_04940 H281DRAFT_04940 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__Burk376:H281DRAFT_04940
          Length = 387

 Score =  307 bits (787), Expect = 3e-88
 Identities = 158/371 (42%), Positives = 225/371 (60%), Gaps = 8/371 (2%)

Query: 6   ILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGYI 65
           +L  L+GF +V    N D++ +IR YL+  G+  ++    E  ++N+FATIGP E  G +
Sbjct: 9   LLSTLIGFATVSRESNLDMIGFIRDYLDELGVKSELFYNAERTKANLFATIGPHERGGIV 68

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVVP     W+ D FRL     RLYGRGT DMKGF+A+VLAAVP      L+ P+
Sbjct: 69  LSGHTDVVPVEGQAWSVDAFRLTERDGRLYGRGTADMKGFIASVLAAVPGFVERDLKLPV 128

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
           HLA SYDEE GC GV  M+A L     +P+  +IGEPT ++ +  HKGK A R  V+G  
Sbjct: 129 HLAFSYDEEVGCLGVRPMLAELERRPHKPVLCLIGEPTELKPVLGHKGKLAMRCQVKGAP 188

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRLVGGPF-EHVFEPPYSSLQIGTVKGGQAVNI 244
            HS+    G+NAI   A ++++     D L    + +  F+PP+S++Q G +KGG+A+NI
Sbjct: 189 CHSAYAPYGVNAIQYAARMISRLEEIGDHLAQPEYRDERFDPPFSTVQTGVIKGGRALNI 248

Query: 245 IPDSCEVEFEARAISGVDPAELLAPVRKTAEA-------LTTLGFEVEWQELSAYPALSL 297
           +P  CE +FE RA+ G D  ++   ++  AEA             ++ +Q LSAYPAL+ 
Sbjct: 249 VPAECEFDFEVRALPGFDAGQVADELQTYAEAELLPRMRAVKSDADIRFQSLSAYPALAT 308

Query: 298 EPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDE 357
            PD+  A LL  LTG      V++GTE GLF++AGI  ++CGPG + + HKPDEY+  ++
Sbjct: 309 SPDSEAARLLSLLTGSNEFGTVAFGTEGGLFEQAGIPTVVCGPGSMDQGHKPDEYLTSEQ 368

Query: 358 LMACRAMVEAL 368
           L  C AM+  L
Sbjct: 369 LSDCDAMLARL 379


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 406
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 387
Length adjustment: 30
Effective length of query: 344
Effective length of database: 357
Effective search space:   122808
Effective search space used:   122808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate H281DRAFT_04940 H281DRAFT_04940 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.22528.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22528.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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