Alignments for a candidate for argC in Paraburkholderia bryophila 376MFSha3.1

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate H281DRAFT_05840 H281DRAFT_05840 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Korea:Ga0059261_0351
         (310 letters)



>FitnessBrowser__Burk376:H281DRAFT_05840
          Length = 315

 Score =  246 bits (628), Expect = 5e-70
 Identities = 135/315 (42%), Positives = 189/315 (60%), Gaps = 9/315 (2%)

Query: 1   MSVSVFIDGAAGTTGLEIRERLATRSDISLIGLDDAHRKDAGKRAEAINSADFVILCLPD 60
           MS  VF+DG  GTTGL+I E L+ R+D+ ++ +D+A RKD  +R   IN++D   LCLPD
Sbjct: 1   MSTKVFVDGQEGTTGLKIFEYLSQRADVEILRIDEAKRKDIEERRRLINASDVTFLCLPD 60

Query: 61  DAAREAVALIANDTTRVIDASTAHRVADGWTYGFAELEPAQAAAIAEARYVSNPGCWPTG 120
            A+RE+ +L+ N+ T +IDASTA R +  W YG  EL  +Q   +  A+ ++ PGC  + 
Sbjct: 61  VASRESASLVENERTVLIDASTAFRTSADWAYGLPELARSQRERLRTAKRIAVPGCHASA 120

Query: 121 FLALVRPLVRAGLIPPDWVLTAGGASGYSGGGKSMIAEFEDG--SEPTGFRAYGLDLEHK 178
           F+  +RPLV AG++ PD+   A   +GYSGGGK MIA++E G  ++    R Y L L HK
Sbjct: 121 FVLAMRPLVDAGVVAPDFDAHAYSITGYSGGGKKMIADYEAGGNAKLKSPRPYALGLTHK 180

Query: 179 HLPEMQKHARIDHAPIFQPAVARSYRGMLIEVPLPLQMLPRKPAPAQIEQVLADAYRDSP 238
           HLPEM  H  +  APIF P V   Y+G+ +      + L RK  P Q++  LA+ Y    
Sbjct: 181 HLPEMAAHTGLTSAPIFTPIVGDFYKGLAVTTYFSPRQLARKTTPQQVQAHLAEYYAGEA 240

Query: 239 IVRVLPSD-----DVSLVRIEDDAGTDRLTIRVFGNAERGQARLVATLDNLGKGAGGAAV 293
            VRV P D     D     ++ +  T+R+ + VFG AER     VA LDNLGKGA GAA+
Sbjct: 241 FVRVAPFDAEANLDSGFFDVQANNDTNRVDLFVFGTAERFVT--VARLDNLGKGASGAAI 298

Query: 294 QNLNIMAGFDQTAGL 308
           Q +N+  G  + +GL
Sbjct: 299 QCMNLAIGAAEESGL 313


Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 244
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 315
Length adjustment: 27
Effective length of query: 283
Effective length of database: 288
Effective search space:    81504
Effective search space used:    81504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate H281DRAFT_05840 H281DRAFT_05840 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.27055.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27055.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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