Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate H281DRAFT_06071 H281DRAFT_06071 aspartate semialdehyde dehydrogenase
Query= SwissProt::Q51344 (370 letters) >FitnessBrowser__Burk376:H281DRAFT_06071 Length = 373 Score = 535 bits (1377), Expect = e-156 Identities = 259/371 (69%), Positives = 306/371 (82%), Gaps = 4/371 (1%) Query: 4 VGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSIDEL 63 VGL+GWRGMVGSVLMQRM +E DFDLIEPVFF+TSN GG P K+ LKDA SI++L Sbjct: 3 VGLVGWRGMVGSVLMQRMQQEGDFDLIEPVFFSTSNAGGNAPSFAKNETKLKDATSIEDL 62 Query: 64 KTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVIDQAL 123 K + I++CQGGDYT+EVFPKLR AGW GYWIDAASSLRM+DDAVI+LDPVN VI AL Sbjct: 63 KKCEAIISCQGGDYTNEVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLDVIKNAL 122 Query: 124 DAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMGAAH 183 G +N+IGGNCTVSLMLMALGGLF LV+WM+AMTYQAASGAGAQNMRELL+QMG + Sbjct: 123 VKGQKNFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLQQMGTLY 182 Query: 184 ASVADDLANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSREEW 243 + +DLA+P+SAILDIDR+V + S+ PT++FG PL GSLIPWIDK+L NG S+EEW Sbjct: 183 GAAKEDLADPSSAILDIDRRVLSAMNSDRMPTDNFGVPLAGSLIPWIDKDLGNGMSKEEW 242 Query: 244 KAQAETNKILAR----FKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQH 299 K AETNKIL + IPVDG+CVR+GAMRCHSQALTIKLNKDVPL ++ +++ Sbjct: 243 KGGAETNKILGKPAMGTPGSIPVDGLCVRIGAMRCHSQALTIKLNKDVPLDEVNSILASG 302 Query: 300 NPWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEP 359 N WVK+VPN RE S+R+L+PA VTGTL+VPVGR+RKL MG +YL AFTVGDQLLWGAAEP Sbjct: 303 NDWVKVVPNEREASMRDLSPAVVTGTLTVPVGRVRKLAMGGEYLSAFTVGDQLLWGAAEP 362 Query: 360 LRRMLRILLER 370 LRRMLRI+L++ Sbjct: 363 LRRMLRIVLDK 373 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 542 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 373 Length adjustment: 30 Effective length of query: 340 Effective length of database: 343 Effective search space: 116620 Effective search space used: 116620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate H281DRAFT_06071 H281DRAFT_06071 (aspartate semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.8040.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8040.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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