Alignments for a candidate for ilvE in Herbaspirillum seropedicae SmR1

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate HSERO_RS03330 HSERO_RS03330 branched-chain amino acid aminotransferase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>FitnessBrowser__HerbieS:HSERO_RS03330
          Length = 306

 Score =  521 bits (1341), Expect = e-152
 Identities = 247/307 (80%), Positives = 282/307 (91%), Gaps = 1/307 (0%)

Query: 1   MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT 60
           MSMADRDGKIW DG+LIDWRDA +HVLTHTLHYGMGVFEGVRAYKT DG TAIFRLQEHT
Sbjct: 1   MSMADRDGKIWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDG-TAIFRLQEHT 59

Query: 61  KRLLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH 120
           +RL NSAKIFQM+VP+DH+TLA AQ +VVREN+LESCY+RP+IW+GSEKLGVSAKGN IH
Sbjct: 60  RRLRNSAKIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIH 119

Query: 121 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180
           VA+AAW WGAYLGEDG+ KGIRVKTSSF+RHHVNVS+VRAKA G+Y+NSILANQEA+ADG
Sbjct: 120 VAVAAWSWGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADG 179

Query: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEK 240
           YDEALLLD +GYVSEGSGEN F+V NGK+YTPDL+SCLDGITRD V+T+ARD GI+VIEK
Sbjct: 180 YDEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEK 239

Query: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKY 300
           RITRDE+Y  DEAFFTGTAAE+TPIRELD R IGSGARGP+TEKLQ+ FFD+V G++ +Y
Sbjct: 240 RITRDEMYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKLQTLFFDVVAGRAPQY 299

Query: 301 ANWLTKI 307
            +WLT +
Sbjct: 300 KHWLTLV 306


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 449
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 306
Length adjustment: 27
Effective length of query: 280
Effective length of database: 279
Effective search space:    78120
Effective search space used:    78120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate HSERO_RS03330 HSERO_RS03330 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.19300.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19300.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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