Alignments for a candidate for argE in Herbaspirillum seropedicae SmR1

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate HSERO_RS13940 HSERO_RS13940 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__HerbieS:HSERO_RS13940
          Length = 390

 Score =  252 bits (643), Expect = 1e-71
 Identities = 144/384 (37%), Positives = 208/384 (54%), Gaps = 15/384 (3%)

Query: 1   MQAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATI---- 56
           M   + L  LV F +     N ++++ +R  L+  G+A  +    +  ++N+FAT+    
Sbjct: 1   MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATA 60

Query: 57  GPKEAR---GYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAV 113
           GP       G ++SGH DVVP     W +DPF+L  +   LY RG+ DMKGF+A  LA V
Sbjct: 61  GPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALV 120

Query: 114 PKLAAMPLRRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKG 173
           P+  AMP  +P+HLA S+DEE GC G P M+  + +   +  G ++GEPT M  + AHKG
Sbjct: 121 PEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 180

Query: 174 KAAARLTVRGRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQ 232
                  V G+S HSS   QG NAI   A ++      AD     GP++  F+ P+S++ 
Sbjct: 181 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 240

Query: 233 IGTVKGGQAVNIIPDSCEVEFEARAISGVDPAELLAPVRK-TAEALTTL------GFEVE 285
              ++GG AVN IP+ CE  +E R + G+  A++ A + K  AE L            VE
Sbjct: 241 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVE 300

Query: 286 WQELSAYPALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGR 345
               +  PAL     A +  L+  LTG      V+YGTEAGLFQ+ GI  I+CGPGDIG 
Sbjct: 301 IDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGN 360

Query: 346 AHKPDEYILIDELMACRAMVEALG 369
           AHKP+E++ + ++  C   +  LG
Sbjct: 361 AHKPNEFVTLAQMEHCEQFLRKLG 384


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 390
Length adjustment: 30
Effective length of query: 344
Effective length of database: 360
Effective search space:   123840
Effective search space used:   123840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate HSERO_RS13940 HSERO_RS13940 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.10462.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10462.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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