Alignments for a candidate for argH in Herbaspirillum seropedicae SmR1

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate HSERO_RS14685 HSERO_RS14685 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>FitnessBrowser__HerbieS:HSERO_RS14685
          Length = 464

 Score =  442 bits (1137), Expect = e-128
 Identities = 224/458 (48%), Positives = 305/458 (66%), Gaps = 1/458 (0%)

Query: 3   KEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLV 62
           K + WS RF   +   + R+ AS+ FD  + + D+ GS AHA+MLAH GIIS+ +  ++ 
Sbjct: 8   KGEAWSARFSEPVSDLVKRYTASVFFDNRMAQVDIQGSLAHAEMLAHQGIISAADYAEIQ 67

Query: 63  AGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLY 122
            G+ QI+ E   G+F   +D EDVH  +EKRLTE+VGD GK+LHT RSRNDQV TD RLY
Sbjct: 68  RGMAQIKGEIEAGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLY 127

Query: 123 LRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDW 182
           +R  +  I   LRE +  LLD+AE+H +T++PG+TH+Q AQP++  HH+LAY +M  RD 
Sbjct: 128 MRGAVDDIIGLLRELRLALLDLAEQHADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDA 187

Query: 183 ERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLC 242
           ER+ D  +R+N  PLG  ALAGTTFPIDR   AK L FD++  NSLD VSDRDFAIEF  
Sbjct: 188 ERMIDARKRINRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRDFAIEFCA 247

Query: 243 AASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVF 302
            A+L+M H+SR++EE+++W S    F+ + D   TGSSIMPQKKNPDVPEL RGKTGRV 
Sbjct: 248 GAALVMTHISRMSEELVIWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVN 307

Query: 303 GHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQA 362
           GHL A+L +MKG PLAYNKD QEDKE LFD+V+T+  +L     + R G+  + + +  A
Sbjct: 308 GHLIALLTLMKGQPLAYNKDNQEDKEPLFDTVDTLTDTLRIFADMAR-GISVKPEAMRAA 366

Query: 363 VTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFAA 422
             + ++ ATD+ADYL  +G+PFR+A+  V   V+T +  G  L DL L + +        
Sbjct: 367 ALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRTCVDKGCDLADLSLADLRAFSDLIGE 426

Query: 423 DIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQID 460
           D++  ++    VAAR+  GGT   QV  A+   R +++
Sbjct: 427 DVFAVLTLEGSVAARDHIGGTAPKQVRAAIAQLRKELN 464


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 516
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 464
Length adjustment: 33
Effective length of query: 428
Effective length of database: 431
Effective search space:   184468
Effective search space used:   184468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate HSERO_RS14685 HSERO_RS14685 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.7155.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7155.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.