Alignments for a candidate for argE in Herbaspirillum seropedicae SmR1

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate HSERO_RS16100 HSERO_RS16100 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__HerbieS:HSERO_RS16100
          Length = 400

 Score =  266 bits (680), Expect = 7e-76
 Identities = 146/371 (39%), Positives = 207/371 (55%), Gaps = 12/371 (3%)

Query: 2   QAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEA 61
           Q  +IL  L+GF +V    N  ++ W+R +LE HG    +    E  ++N+FAT+G    
Sbjct: 15  QTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATLGDAGP 74

Query: 62  R--GYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAM 119
              G + SGH DVVP     W +DPF   V   +L+GRG  DMKGF+A  +A +P +   
Sbjct: 75  GRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMARLPAIDLA 134

Query: 120 PLRRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARL 179
            L  PLH + SYDEE GC GV  ++A L +   +P G IIGEPT M+ + AHKGK + R 
Sbjct: 135 RLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHKGKRSYRC 194

Query: 180 TVRGRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRLV--GGPFEHVFEPPYSSLQIGTVK 237
           +V G + HSS P  G+N+I   A ++   + E    V   G  +  F+ PYSS+      
Sbjct: 195 SVHGHAAHSSCPHLGINSI-DFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSIATTLTS 253

Query: 238 GGQAVNIIPDSCEVEFEARAISGVDPAELLAPVRKTAE-------ALTTLGFEVEWQELS 290
           GG A NIIPD  E  FE R + G+DPAE+   V+  AE        +  +   +E++ L+
Sbjct: 254 GGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRIEFETLT 313

Query: 291 AYPALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPD 350
           +YP +    D PL      + G E    V +GTE GLF +AG+ A+ICGPGDI  AHKP+
Sbjct: 314 SYPGMCTPADDPLVTSALRILGSERARKVGFGTEGGLFGQAGMPAVICGPGDIAHAHKPN 373

Query: 351 EYILIDELMAC 361
           E++ +++L  C
Sbjct: 374 EFVTLEQLARC 384


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 380
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 400
Length adjustment: 30
Effective length of query: 344
Effective length of database: 370
Effective search space:   127280
Effective search space used:   127280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate HSERO_RS16100 HSERO_RS16100 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.13523.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13523.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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