Alignments for a candidate for hisH in Herbaspirillum seropedicae SmR1

Align IGP synthase glutamine amidotransferase subunit; EC 2.4.2.- (characterized)
to candidate HSERO_RS21015 HSERO_RS21015 imidazole glycerol phosphate synthase

Query= CharProtDB::CH_024511
         (196 letters)



>FitnessBrowser__HerbieS:HSERO_RS21015
          Length = 202

 Score =  135 bits (339), Expect = 6e-37
 Identities = 84/203 (41%), Positives = 117/203 (57%), Gaps = 11/203 (5%)

Query: 3   VVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRE--- 59
           + I++ G  NL S+ +   R G + ++  DP+ V  A+KL LPGVG   AAM ++ E   
Sbjct: 2   ITIVNYGMGNLGSLLNMFKRIGVKARIESDPEAVRDAEKLVLPGVGAFDAAMHRINETPG 61

Query: 60  -RELFDLIKACTQ--PVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDF-GLPLPH 115
            R   D  KA  +  PV+G+CLGMQLL R SEE   +  LG ID +  +     GL +PH
Sbjct: 62  LRAALDH-KALIERVPVIGVCLGMQLLTRSSEEGK-LPGLGWIDGEAIRFPRIDGLKVPH 119

Query: 116 MGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPV-NP-WTIAQCNYGEPFTAAVQKDNFY 173
           MGWN  +P   + L   I     +YFVHSY + V NP  ++ +  YG  F +A+ +DN Y
Sbjct: 120 MGWNVAHPATPSALTNDIGIEPRYYFVHSYFVKVDNPVHSLMRTQYGVEFDSAIGRDNIY 179

Query: 174 GVQFHPERSGAAGAKLLKNFLEM 196
           G QFHPE+S   G K+L+NF E+
Sbjct: 180 GAQFHPEKSHRFGMKILQNFAEL 202


Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 202
Length adjustment: 21
Effective length of query: 175
Effective length of database: 181
Effective search space:    31675
Effective search space used:    31675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate HSERO_RS21015 HSERO_RS21015 (imidazole glycerol phosphate synthase)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.17234.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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