Alignments for a candidate for prpE in Dyella japonica UNC79MFTsu3.2

Align propionate-CoA ligase (EC 6.2.1.17) (characterized)
to candidate N515DRAFT_0016 N515DRAFT_0016 propionyl-CoA synthetase

Query= BRENDA::P77495
         (628 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0016
          Length = 630

 Score =  771 bits (1992), Expect = 0.0
 Identities = 370/628 (58%), Positives = 475/628 (75%), Gaps = 5/628 (0%)

Query: 1   MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDR 60
           M +  FY+ SI  PE FWAEQA+ IDWQTP  Q LD+S PPF RWF  G TNLC+NAIDR
Sbjct: 1   MDYETFYRHSIEAPEAFWAEQAQLIDWQTPPRQVLDYSRPPFRRWFVGGTTNLCYNAIDR 60

Query: 61  WLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAE 120
            LE + + LAL+A+S+ET   R  ++RQLH EVN  A++L +L VQRGDRV++Y+P IAE
Sbjct: 61  HLEARGDQLALVAISTETGLTRELSYRQLHREVNVFAAVLAALDVQRGDRVVIYLPNIAE 120

Query: 121 AHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDD 180
           A   +LACAR+GAIHSVVFGGFA+H++A RIDDA+P L+++ADAG RGGK+IPYK L+D 
Sbjct: 121 AVFAMLACARLGAIHSVVFGGFAAHNLALRIDDAQPKLLIAADAGMRGGKVIPYKPLVDA 180

Query: 181 AISQAQHQPRHVLLVDRGL-AKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILY 239
           A+ Q+   P HVL+VDRGL  +M RV+GRD+D+A LR  H  A VPVAWLESNE S +LY
Sbjct: 181 ALEQSAAPPPHVLIVDRGLDPQMTRVAGRDLDYAQLRKAHEQAEVPVAWLESNEPSYLLY 240

Query: 240 TSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLA 299
           TSGTTGKPKG+QRDVGGYAVA+A S+  IF    G V F  SD+GW VGHSY VY PL+A
Sbjct: 241 TSGTTGKPKGIQRDVGGYAVAMAMSVRYIFDIAPGQVMFSTSDVGWAVGHSYNVYGPLIA 300

Query: 300 GMATIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVL 359
           G  +++YEGLPT PD G+WW + E+Y V  MFS+PT IRVLKK   A +RK+DLSSL+ L
Sbjct: 301 GATSLLYEGLPTRPDPGIWWYLCERYSVRTMFSSPTGIRVLKKQDPAWLRKYDLSSLQWL 360

Query: 360 YLAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGY 419
           +LAGEPLDEPTA W+++ L VPVIDNYWQTE+GWP + +  GL+ +  + GSPG+P  GY
Sbjct: 361 FLAGEPLDEPTAHWITDGLGVPVIDNYWQTETGWPAITLMPGLELKRVKFGSPGLPAPGY 420

Query: 420 NVQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYATFDW 479
            +++++E TGE      KG+LV E PLPPGC+ T+WGDD R++ +Y+  F   +Y++ DW
Sbjct: 421 RMKVIDEATGEEAAPGHKGVLVFEPPLPPGCLSTVWGDDERYLSSYFGHFKELLYSSLDW 480

Query: 480 GIRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVA 539
            IRD  GY  ILGRTDDVINVAGHRLGTREIEES+++HP VAE AV+GV+D LKGQV V 
Sbjct: 481 AIRDEHGYTTILGRTDDVINVAGHRLGTREIEESVATHPAVAEAAVIGVRDELKGQVPVV 540

Query: 540 FVIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQ 599
           F   K+    +   VA + ++ ++     Q+G   RP+ V+ V+ LPKTRSGK+LRR++Q
Sbjct: 541 FATLKQDAGTQAGQVAQAMQQRVV----DQLGGIARPSRVYVVNALPKTRSGKLLRRSLQ 596

Query: 600 AICEGRDPGDLTTIDDPASLDQIRQAME 627
           A+ E RDPGDL+T+DDP +L++IR+A+E
Sbjct: 597 ALAEQRDPGDLSTLDDPGALEEIRRALE 624


Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1237
Number of extensions: 45
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 630
Length adjustment: 38
Effective length of query: 590
Effective length of database: 592
Effective search space:   349280
Effective search space used:   349280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)

Align candidate N515DRAFT_0016 N515DRAFT_0016 (propionyl-CoA synthetase)
to HMM TIGR02316 (prpE: propionate--CoA ligase (EC 6.2.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.374.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.374.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.