Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate N515DRAFT_0116 N515DRAFT_0116 tryptophan synthase, alpha chain
Query= uniprot:M4NLA4 (266 letters) >FitnessBrowser__Dyella79:N515DRAFT_0116 Length = 266 Score = 431 bits (1107), Expect = e-125 Identities = 219/266 (82%), Positives = 238/266 (89%) Query: 1 MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60 M+RIDRRF LK+ RTGLIPFVTAGDP+PEH VALMHALVDAGAD+IELGVPFSDPMAD Sbjct: 1 MNRIDRRFDTLKSNRRTGLIPFVTAGDPAPEHTVALMHALVDAGADVIELGVPFSDPMAD 60 Query: 61 GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120 GPVIQHASERAIAKGVGLADVLGWV+ FRQ DADTP+VLMGYLNP+E GY RFA EAV+ Sbjct: 61 GPVIQHASERAIAKGVGLADVLGWVSTFRQRDADTPVVLMGYLNPVEIRGYERFAAEAVE 120 Query: 121 AGVDGVLLVDCPLEESAVLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFAG 180 AGVDGVLLVDCPLEESAVL PL+ AGL++ILLAAPTT P+RMAQLCG+AEGFLYYVSFAG Sbjct: 121 AGVDGVLLVDCPLEESAVLAPLKAAGLRQILLAAPTTAPARMAQLCGAAEGFLYYVSFAG 180 Query: 181 ITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRLA 240 ITGA LST DIAARVA +R+RAKAPVAVGFG+RDA SA+ IAGFADAVVIGSALV+RLA Sbjct: 181 ITGAGRLSTSDIAARVAGIRSRAKAPVAVGFGVRDAQSARDIAGFADAVVIGSALVERLA 240 Query: 241 GATDAGEITRRTQAFLAPIRAALDAR 266 GA A EI R +AFL PIR ALDAR Sbjct: 241 GAERADEIADRAKAFLQPIRTALDAR 266 Lambda K H 0.322 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 322 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 266 Length of database: 266 Length adjustment: 25 Effective length of query: 241 Effective length of database: 241 Effective search space: 58081 Effective search space used: 58081 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate N515DRAFT_0116 N515DRAFT_0116 (tryptophan synthase, alpha chain)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))
../bin/blast/fastacmd -i /tmp/list.19437.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19437.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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