Alignments for a candidate for hutI in Dyella japonica UNC79MFTsu3.2

Align imidazolonepropionase (EC 3.5.2.7) (characterized)
to candidate N515DRAFT_0142 N515DRAFT_0142 imidazolonepropionase

Query= metacyc::MONOMER-11617
         (401 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0142
          Length = 410

 Score =  466 bits (1200), Expect = e-136
 Identities = 244/395 (61%), Positives = 291/395 (73%), Gaps = 7/395 (1%)

Query: 10  VATMAEGR-YSAIEDAAIVTSAGLIEWIGPRAELAPVDADRTV----DLGGAWITPGLID 64
           +AT   G+ Y  IED A+  + G I WIGPRA+L P DA         L GA +TPGL+D
Sbjct: 15  LATFDGGQPYGLIEDGALAMAGGRIAWIGPRAQL-PADAQARAASVEHLDGALVTPGLVD 73

Query: 65  CHTHAVFGGNRSGEFEQRLQGVSYAEIAAQGGGIASTVRATRAASEDELFASARQRVQAL 124
           CHTH VFGG+R+ EF+ RL G SY EIA  GGGIASTV+ATR A EDELF  A  R +AL
Sbjct: 74  CHTHLVFGGDRAHEFDLRLNGASYEEIARAGGGIASTVKATREADEDELFTQALPRARAL 133

Query: 125 MRDGVTTLEIKSGYGLDLANERKMLRVARRLADELPLAVRATCLAAHALPPEYAGRADDY 184
           + DGVTTLEIKSGYGL+L +ER+MLRVARRL + L + VR + L  HALP EY    D Y
Sbjct: 134 LADGVTTLEIKSGYGLELESERRMLRVARRLGEALGIGVRTSFLGLHALPAEYREDRDGY 193

Query: 185 IAHICDEMLPALAAEGLVDAVDAFCEHLAFSPAQVERLFIKARELGLPVKLHAEQLSSLH 244
           +A +CD +LPALAAEGLVDAVDAFCE + F+  +  R+F +AR LGLPVKLHAEQLS+L 
Sbjct: 194 VALVCDRILPALAAEGLVDAVDAFCEGIGFTREETRRVFERARSLGLPVKLHAEQLSNLE 253

Query: 245 GSSLAARYQALSADHLEFMTEEDAIAMAAAGTVAVLLPGAFYFLRETQLPPMDALRRHGV 304
           G++L A Y  LSADHLE+++E+   AMAA GTVAVLLPGAFY LRET+LPP+ ALR HGV
Sbjct: 254 GAALVAEYDGLSADHLEYLSEDGVRAMAAKGTVAVLLPGAFYALRETKLPPIAALREHGV 313

Query: 305 KIALASDLNPGTSPGLSLRLMLNMGCTCFRMTPEEALAGVTVHAATALGLGDSHGSLEVG 364
            +A+A+D NPGTSP LSLRL   M CT FR+TPEEAL GVTVHAA ALGL D  G+L VG
Sbjct: 314 AMAVATDCNPGTSPLLSLRLAAGMACTLFRLTPEEALRGVTVHAARALGL-DDRGTLAVG 372

Query: 365 KVADFVAWQIERPADLAYWLGGDLPKRVVRKGHEI 399
           + AD V WQ++RPA+L YW+GG L + V   G  I
Sbjct: 373 QRADLVVWQVQRPAELCYWIGGGLVRAVYCGGRRI 407


Lambda     K      H
   0.321    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 538
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 410
Length adjustment: 31
Effective length of query: 370
Effective length of database: 379
Effective search space:   140230
Effective search space used:   140230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_0142 N515DRAFT_0142 (imidazolonepropionase)
to HMM TIGR01224 (hutI: imidazolonepropionase (EC 3.5.2.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.20648.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20648.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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