Alignments for a candidate for hutF in Dyella japonica UNC79MFTsu3.2

Align formimidoylglutamate deiminase (EC 3.5.3.13) (characterized)
to candidate N515DRAFT_0145 N515DRAFT_0145 formimidoylglutamate deiminase

Query= BRENDA::Q9HU77
         (453 letters)



>FitnessBrowser__Dyella79:N515DRAFT_0145
          Length = 453

 Score =  455 bits (1170), Expect = e-132
 Identities = 247/449 (55%), Positives = 297/449 (66%), Gaps = 10/449 (2%)

Query: 6   AERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMA 65
           A++  L +GW+ +  F + A G +A   P+  A   ERLG  VLPGMPNLHSHAFQRAMA
Sbjct: 10  ADQLWLADGWSADGAFAVDASGHVAP--PEGEA---ERLGAWVLPGMPNLHSHAFQRAMA 64

Query: 66  GLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHD 125
           GLAE  G  +DSFWTWRE MY   A + PE+++ IA QLY+EMLKAGYT V EFHY+HH 
Sbjct: 65  GLAERKGRSDDSFWTWRETMYAFAAAIGPEELKAIAAQLYVEMLKAGYTQVCEFHYLHHQ 124

Query: 126 LDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLE 185
            DG  YA P  +SL +  AA   GI LTLLPVLY   GF G+P S  QRRF N   +Y+ 
Sbjct: 125 PDGTPYAQPEAMSLALIEAARETGITLTLLPVLYMTGGFDGRPLSARQRRFGNDLSSYVR 184

Query: 186 LLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAG-HDDLPVHIHIAEQQKEVDDCQ 244
           LL+ LR   E  G  +G+  HSLRAV  + +  +LA     DLPVHIHIAEQ  EV DC 
Sbjct: 185 LLEALRRH-EGDGLRIGIALHSLRAVPEEAMRGLLATRIAQDLPVHIHIAEQIGEVQDCL 243

Query: 245 AWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFP 304
           A  G RP++WL ++  VD RW LVHATH    E + +ARSGAVAGLC +TEANLGDG+FP
Sbjct: 244 ATRGARPVEWLLDHAPVDARWTLVHATHLTGHETSRLARSGAVAGLCPTTEANLGDGLFP 303

Query: 305 ATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAA 364
            +D+L   G LGIGSDSH+S+S VEELRWLEYGQRL  R RN   R +   +G TL+ AA
Sbjct: 304 LSDYLDAKGVLGIGSDSHISISPVEELRWLEYGQRLSTRHRNIAARREGDSVGETLWRAA 363

Query: 365 LAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVA 424
           L GGA+A G P+G L    RADLLVLD   P LA+ +  +LL+ +LFAG    VR VM  
Sbjct: 364 LRGGARAAGLPVGELRAAARADLLVLDDESPLLAARDARSLLDSFLFAGNTPLVRHVMCG 423

Query: 425 GRWVVRDGRH---AGEERSARAFVQVLGE 450
           GRWVVRD RH   AG     RA V+ L +
Sbjct: 424 GRWVVRDFRHHDEAGIAARYRAVVERLAQ 452


Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 637
Number of extensions: 38
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 453
Length adjustment: 33
Effective length of query: 420
Effective length of database: 420
Effective search space:   176400
Effective search space used:   176400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate N515DRAFT_0145 N515DRAFT_0145 (formimidoylglutamate deiminase)
to HMM TIGR02022 (hutF: formiminoglutamate deiminase (EC 3.5.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.21228.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21228.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.