Align Arginase (EC 3.5.3.1) (characterized)
to candidate N515DRAFT_0348 N515DRAFT_0348 arginase
Query= reanno::Dyella79:N515DRAFT_0348
(304 letters)
>FitnessBrowser__Dyella79:N515DRAFT_0348
Length = 304
Score = 613 bits (1581), Expect = e-180
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MGNQAVSLIGAPTDIGAGHRGASMGPEALRVANLQARLKARGIDVVDRGNLQGPLNPWEP 60
MGNQAVSLIGAPTDIGAGHRGASMGPEALRVANLQARLKARGIDVVDRGNLQGPLNPWEP
Sbjct: 1 MGNQAVSLIGAPTDIGAGHRGASMGPEALRVANLQARLKARGIDVVDRGNLQGPLNPWEP 60
Query: 61 PREGYRHLSAVVDWNRAVYEAIYGELSLGRLPVMLGGDHCLAIGSITAVARHCREHHKKL 120
PREGYRHLSAVVDWNRAVYEAIYGELSLGRLPVMLGGDHCLAIGSITAVARHCREHHKKL
Sbjct: 61 PREGYRHLSAVVDWNRAVYEAIYGELSLGRLPVMLGGDHCLAIGSITAVARHCREHHKKL 120
Query: 121 RVLWLDAHADFNTAQITPSGNIHGMPVACLCGMGPEELTTLGGSKPATAPDVFRQIGIRS 180
RVLWLDAHADFNTAQITPSGNIHGMPVACLCGMGPEELTTLGGSKPATAPDVFRQIGIRS
Sbjct: 121 RVLWLDAHADFNTAQITPSGNIHGMPVACLCGMGPEELTTLGGSKPATAPDVFRQIGIRS 180
Query: 181 VDEGEKRLVREARVSIFDMRQIDESGMKRVMEEALEGVDADTHLHVSFDVDFLDPAIAPG 240
VDEGEKRLVREARVSIFDMRQIDESGMKRVMEEALEGVDADTHLHVSFDVDFLDPAIAPG
Sbjct: 181 VDEGEKRLVREARVSIFDMRQIDESGMKRVMEEALEGVDADTHLHVSFDVDFLDPAIAPG 240
Query: 241 VGTTVRGGPNYREAQLCMEMIADTGRLASLDIVELNPAFDKRNQTAKLAVDLVESLFGKS 300
VGTTVRGGPNYREAQLCMEMIADTGRLASLDIVELNPAFDKRNQTAKLAVDLVESLFGKS
Sbjct: 241 VGTTVRGGPNYREAQLCMEMIADTGRLASLDIVELNPAFDKRNQTAKLAVDLVESLFGKS 300
Query: 301 TLIR 304
TLIR
Sbjct: 301 TLIR 304
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 520
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 304
Length adjustment: 27
Effective length of query: 277
Effective length of database: 277
Effective search space: 76729
Effective search space used: 76729
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)
Align candidate N515DRAFT_0348 N515DRAFT_0348 (arginase)
to HMM TIGR01229 (rocF: arginase (EC 3.5.3.1))
../bin/blast/fastacmd -i /tmp/list.32414.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32414.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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