Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate N515DRAFT_0576 N515DRAFT_0576 homoserine kinase
Query= reanno::Dyella79:N515DRAFT_0576 (330 letters) >FitnessBrowser__Dyella79:N515DRAFT_0576 Length = 330 Score = 644 bits (1661), Expect = 0.0 Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MNAQLAAQNPEPMARSPQRALSAQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEP 60 MNAQLAAQNPEPMARSPQRALSAQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEP Sbjct: 1 MNAQLAAQNPEPMARSPQRALSAQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEP 60 Query: 61 VVRIAAIEGCVVDLPLDPAQNTAGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASS 120 VVRIAAIEGCVVDLPLDPAQNTAGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASS Sbjct: 61 VVRIAAIEGCVVDLPLDPAQNTAGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASS 120 Query: 121 CVAALVAANALLERPLPMESLYGFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRV 180 CVAALVAANALLERPLPMESLYGFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRV Sbjct: 121 CVAALVAANALLERPLPMESLYGFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRV 180 Query: 181 PVPDAWHCALVHPHMVLETRKARAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREG 240 PVPDAWHCALVHPHMVLETRKARAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREG Sbjct: 181 PVPDAWHCALVHPHMVLETRKARAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREG 240 Query: 241 LNDVLVEPRRAPLIPGFARVKQAAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAA 300 LNDVLVEPRRAPLIPGFARVKQAAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAA Sbjct: 241 LNDVLVEPRRAPLIPGFARVKQAAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAA 300 Query: 301 AFAEAGLDSDTLVSPIAGPSAALIDVERKA 330 AFAEAGLDSDTLVSPIAGPSAALIDVERKA Sbjct: 301 AFAEAGLDSDTLVSPIAGPSAALIDVERKA 330 Lambda K H 0.320 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 468 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 330 Length of database: 330 Length adjustment: 28 Effective length of query: 302 Effective length of database: 302 Effective search space: 91204 Effective search space used: 91204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate N515DRAFT_0576 N515DRAFT_0576 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))
../bin/blast/fastacmd -i /tmp/list.15678.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15678.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.