Alignments for a candidate for dapA in Dyella japonica UNC79MFTsu3.2

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate N515DRAFT_1147 N515DRAFT_1147 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q9I4W3
         (292 letters)



>FitnessBrowser__Dyella79:N515DRAFT_1147
          Length = 297

 Score =  248 bits (632), Expect = 2e-70
 Identities = 132/272 (48%), Positives = 174/272 (63%)

Query: 2   IAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR 61
           I GS+ AL TPF + G LD D+  +L+D+ +  GT A+V  G+TGE+  L+ +E+  ++ 
Sbjct: 3   IGGSICALATPFTSDGALDLDAFGRLLDYQVAGGTQAVVVAGSTGEAHMLEHDEYETLLS 62

Query: 62  RVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRH 121
             V ++ GRIPV+AGTG   T   VALT  A+  GADA L+V P+Y +PTQEG+ +HF  
Sbjct: 63  FAVKRIAGRIPVLAGTGEAGTARTVALTRRARELGADAALVVAPFYVRPTQEGLRRHFLE 122

Query: 122 IAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDF 181
           +AE   +P +LYNVPGRT+CD+LPETV  L + P I+GIKEA G  +R + + E    DF
Sbjct: 123 VAEHGGLPVLLYNVPGRTACDLLPETVAALREHPAIVGIKEAVGSDERIRALAELARADF 182

Query: 182 LVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHK 241
           +  SGDD TA + ML G  G ISV AN+AP+A  +LC AA  GDAAA    +D L PL +
Sbjct: 183 VYLSGDDPTAGKAMLAGAAGTISVVANLAPKAFRELCDAATSGDAAATTRCDDVLAPLVQ 242

Query: 242 ALFIESNPIPVKWALHEMGLIPEGIRLPLTWL 273
           AL    NPI VK  L  +GL     RLPL  L
Sbjct: 243 ALNCAPNPIAVKAGLPALGLGSAAPRLPLVEL 274


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 253
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 297
Length adjustment: 26
Effective length of query: 266
Effective length of database: 271
Effective search space:    72086
Effective search space used:    72086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_1147 N515DRAFT_1147 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.12516.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12516.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.