Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate N515DRAFT_2456 N515DRAFT_2456 acetate kinase
Query= BRENDA::G4T0C7 (401 letters) >FitnessBrowser__Dyella79:N515DRAFT_2456 Length = 401 Score = 258 bits (658), Expect = 3e-73 Identities = 162/398 (40%), Positives = 223/398 (56%), Gaps = 15/398 (3%) Query: 5 NGNILVINSGSSSIKYRLIA--LPQEQVLADGLLERIGEQESRIIHRADDSGRLNEIKQS 62 NG IL +N+GSSSIK+ L L ++++ G +E IG E R D ++ + Sbjct: 2 NGIILALNAGSSSIKFALHEHRLAAQRLILRGAIEGIGA-EPRFTAWQPDGAIIDREAWA 60 Query: 63 VIAADHHQAFKAVFEILGEN---CSVDAIGHRVVHGGDRFSGPALVDDDTIASMRALCRI 119 AA H Q + + + + +GHRVVHGG F P +D + + L + Sbjct: 61 DAAAPHEQLLQPLLAWITARLGAAELAVVGHRVVHGGPSFGQPVRIDTPVMQELERLVSL 120 Query: 120 APLHNPVNLLGIESCLAHFPGVPQVAVFDTAFHQTMPPHAYRYAIPETWYSDYGIRRFGF 179 APLH P L + PG+ QVA FDTAFH+ MP A +P Y+D G+RR+GF Sbjct: 121 APLHQPHPLAAARAIARLRPGLMQVACFDTAFHRGMPAVAASLGLPRA-YADDGMRRYGF 179 Query: 180 HGTSHHYVARRAAEFIGKPFDRSHLITLHLGNGASATAIANGRSVDTSMGFTPLEGLVMG 239 HG S+ Y+A R EF + D +I HLGNGAS A+ +GRS+DT+MGF+ L+GLVMG Sbjct: 180 HGLSYEYLAGRLREFAPELAD-GRVIMAHLGNGASLCAMRHGRSIDTTMGFSALDGLVMG 238 Query: 240 TRSGDLDPAIPLFVEQTENTDTDAIDRALNRESGLKGLCGTN-DLRTVLEQTNAGDERAR 298 +R G LDP L + Q AI+ L +ESGL G+ G + D+R +L + AR Sbjct: 239 SRCGSLDPGAVLHLLQARGLSVAAIEHLLYQESGLLGVSGISADMRALLASDSG---HAR 295 Query: 299 LALDLYCYRIKKYIGAYYAVLGEVDALVFTGGVGENAAEVRRLACEGLSRLGIAIDEAAN 358 A++L+ YRI K IGA +V G +DALVF+ G+GE+AA +R C L+ LG+ DE+AN Sbjct: 296 EAIELFVYRIVKEIGALTSVAGGLDALVFSAGIGEHAASIRSAVCRALAWLGVECDESAN 355 Query: 359 SDVTGAIAEIGLAESRTRILVIKTDEELQIAREAMAVL 396 I+ A S R+ VI+TDEE IA A VL Sbjct: 356 GLHKMLIS---TAHSAVRVFVIRTDEEAVIAAHAAGVL 390 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 417 Number of extensions: 18 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 401 Length adjustment: 31 Effective length of query: 370 Effective length of database: 370 Effective search space: 136900 Effective search space used: 136900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate N515DRAFT_2456 N515DRAFT_2456 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.15715.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15715.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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