Alignments for a candidate for fadA in Dyella japonica UNC79MFTsu3.2

Align 3-ketoacyl-CoA thiolase; Acetyl-CoA acyltransferase; Beta-ketothiolase; EC 2.3.1.16 (characterized)
to candidate N515DRAFT_2688 N515DRAFT_2688 acetyl-CoA acyltransferase

Query= SwissProt::O32177
         (391 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2688
          Length = 401

 Score =  370 bits (950), Expect = e-107
 Identities = 199/401 (49%), Positives = 264/401 (65%), Gaps = 18/401 (4%)

Query: 1   MKEAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGN-IDDLIIGCATP 59
           +++A IV+  RTPVGKA +G     RPDD+ A  ++  + +A G + + I D+I+GCA P
Sbjct: 5   VQDAYIVAATRTPVGKAPRGVFRNTRPDDMLAHVIRAVMAQAPGIDAHRIGDVIVGCAMP 64

Query: 60  EAEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAES 119
           EAEQG+N+AR    LAGLP TVP +TVNR+CSSG+Q+IA AA++I LG  D  IA G ES
Sbjct: 65  EAEQGMNVARIGLLLAGLPDTVPGVTVNRFCSSGVQAIAQAADRIRLGEADLMIAAGTES 124

Query: 120 MSQVPMMGHVTRPNLALAEKAP-EYYMSMGHTAEQVAKKYGVSREDQDAFAVRSHQNAAK 178
           MS VPMMGH    N  + +         MG TAE VAK++ +SRE+QD FA  SH+ A  
Sbjct: 125 MSMVPMMGHKVAMNPGIFDNEHIGIAYGMGITAENVAKQWKISREEQDTFAAASHERALA 184

Query: 179 ALAEGKFKDEIVPVEVTVTEIGEDHKP-------MEKQFVFSQDEGVRPQTTADILSTLR 231
           A+  G+FKDEI P ++      +DH P            +   DEG RP +T ++L  L+
Sbjct: 185 AIKAGEFKDEITPFKL------DDHYPDLATRSIKTDSRLIDTDEGPRPGSTVEVLGKLK 238

Query: 232 PAF---SVDGTVTAGNSSQTSDGAAAVMLMDREKADALGLAPLVKFRSFAVGGVPPEVMG 288
           P F      G+VTAGNSSQTSDGA AV+L         GL P+ +F S++V GV P++MG
Sbjct: 239 PVFRNGQFGGSVTAGNSSQTSDGAGAVLLASEAAIKEYGLTPIARFVSYSVAGVRPDIMG 298

Query: 289 IGPVEAIPRALKLAGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHP 348
           IGP EAIP+ALK AG+    +   ELNEAFA+Q++ VI++LG+D  K+N  GGAIALGHP
Sbjct: 299 IGPKEAIPKALKQAGMTQDQLDWIELNEAFAAQSLAVIKDLGLDPSKINPLGGAIALGHP 358

Query: 349 LGCTGTKLTLSLIHEMKRRNEQFGVVTMCIGGGMGAAGVFE 389
           LG TG     +L+H M+RR +++G+VTMCIG GMGAAG+FE
Sbjct: 359 LGATGAIRAATLVHGMRRRKQKYGMVTMCIGTGMGAAGIFE 399


Lambda     K      H
   0.316    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 421
Number of extensions: 14
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 401
Length adjustment: 31
Effective length of query: 360
Effective length of database: 370
Effective search space:   133200
Effective search space used:   133200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate N515DRAFT_2688 N515DRAFT_2688 (acetyl-CoA acyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.22382.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22382.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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