Alignments for a candidate for metX in Dyella japonica UNC79MFTsu3.2

Align L-serine/homoserine O-acetyltransferase; Homoserine O-trans-acetylase; EC 2.3.1.30; EC 2.3.1.31 (characterized)
to candidate N515DRAFT_2885 N515DRAFT_2885 homoserine O-acetyltransferase

Query= SwissProt::D2Z028
         (374 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2885
          Length = 368

 Score =  452 bits (1163), Expect = e-132
 Identities = 225/363 (61%), Positives = 270/363 (74%), Gaps = 2/363 (0%)

Query: 8   ASRFIELPDGFAMRRGGALYGARIAYETFGSLNAARDNAVLVLTGLSPDAHAASRPDDPT 67
           A R+  LP  F M+RGG L+GAR+A+ET+G+L+ ARDNA+L+LTGLSP AHAAS   DP+
Sbjct: 5   ARRYFSLPSPFPMKRGGELHGARVAFETWGALSDARDNALLILTGLSPSAHAASNEQDPS 64

Query: 68  PGWWEAMVGPGKPVDTDLWHVICVNSLGSCKGSTGPASTDPRTGEPYRLSFPELSIEDIA 127
           PGWWEAM+GPGK +DTD W VICVNSLGS KGST PAS DP TGEPYRLSFPEL++ED+A
Sbjct: 65  PGWWEAMIGPGKAIDTDRWFVICVNSLGSDKGSTCPASIDPATGEPYRLSFPELALEDVA 124

Query: 128 DAAAHTVRALGISRLACVVGASMGGMSALALLARHPELARTHISLSGAVHALPFSIAVRS 187
           +AA   V +LGI +LAC+VG SMGGMSALA +  HP   RTHIS+  A  A PF+IA+RS
Sbjct: 125 NAAHAAVSSLGIEQLACLVGCSMGGMSALAYMLLHPGSVRTHISVDTAPQAQPFAIAIRS 184

Query: 188 LQREAIRSDPGWLQGHYDEGEGPRRGMLTARKLGMMTYRSAQEWDCRFGRTRIGERRRAD 247
           LQREAIR DP W  G YD+   P  GM  ARKLG++TYRSA EW+ RF R R+   +R D
Sbjct: 185 LQREAIRLDPQWNNGRYDDAHYPETGMSIARKLGVITYRSAMEWNGRFARIRLDAEQRDD 244

Query: 248 QGRFGPEFEVESYLDFHAQRFADRFDPNSYLYLSHAMDQFDLGDGGGGGGGAPGALSRMR 307
              FG EF+VESYL+ HAQRF   FDPNSYLYLS A D FD+ +   G G     L R+R
Sbjct: 245 DVPFGFEFQVESYLEGHAQRFVRTFDPNSYLYLSRASDWFDISE--YGEGSIQAGLKRIR 302

Query: 308 VERALVMGARTDILFPLSQQQEIADGLSAGGADVSFLPVDTPAGHDAFLVDIERFGPPVA 367
           VE+ALV+G  TDILFPL QQ++IA+GL A GA V F+ +D+P GHDAFLVDIE +   + 
Sbjct: 303 VEQALVIGVSTDILFPLEQQEQIAEGLEAAGAAVEFVALDSPQGHDAFLVDIENYSRAIG 362

Query: 368 KFL 370
            FL
Sbjct: 363 GFL 365


Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 469
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 368
Length adjustment: 30
Effective length of query: 344
Effective length of database: 338
Effective search space:   116272
Effective search space used:   116272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_2885 N515DRAFT_2885 (homoserine O-acetyltransferase)
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.5269.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5269.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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