Alignments for a candidate for rbsK in Dyella japonica UNC79MFTsu3.2

Align Ribokinase (EC 2.7.1.15) (characterized)
to candidate N515DRAFT_3101 N515DRAFT_3101 ribokinase

Query= reanno::pseudo5_N2C3_1:AO356_00950
         (304 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3101
          Length = 297

 Score =  225 bits (573), Expect = 1e-63
 Identities = 135/301 (44%), Positives = 179/301 (59%), Gaps = 11/301 (3%)

Query: 3   AKVVVIGSLNMDLVTRAPRLPRGGETLIGESFATIPGGKGANQAVAAARLGAQVSMVGCV 62
           A+VVV+GS+NMDLVT APR    GET++GE F T+PGGKGANQAVAAARLGA+V+++G +
Sbjct: 2   ARVVVVGSINMDLVTLAPRFAGPGETVLGERFLTVPGGKGANQAVAAARLGAEVTLIGAL 61

Query: 63  GDDAYGEQLRGALLAEGIDCQAV-RVEQGSSGVALIVVDDNSQNAIVIVAGANGALTAEV 121
           GDD +GEQLR  L  EGI    V R++   SG A I V    +N I++V  AN  +T   
Sbjct: 62  GDDTFGEQLREGLAREGIALDYVSRIDDCGSGTASITV-AGGENEIIVVPAANARVTPAQ 120

Query: 122 LDGVDDVLQSADVIICQLEVPDATVGHALKRGRALGKIVILNPAPASHALPADWYACIDY 181
           ++   D +  AD ++ Q+E+P  +V   L+ G  LG  VILNPAPA   LP +W     Y
Sbjct: 121 VEAATDAIARADAVLVQMEIPLESVEATLRLGHRLGVPVILNPAPA-QKLPTEWLKLARY 179

Query: 182 LIPNESEAAVLSGLAVDSLETAEAAAAHLIAAGAGKVIVTLGAQGLMFANGASFEHFPAP 241
           + PN+ E A+L  L  D+ +   A    L+    G V++T G +G  +       H    
Sbjct: 180 VTPNQHELAIL--LGADAQQDFRA----LMRQAPGPVVLTRGGEGAWYREDGEPTHQSGF 233

Query: 242 RVKAVDTTAAGDTFVGGFAAALACGKSEVDAIRFGQVAAALSVTRAGAQPSIPTLLEVQA 301
            V  VDTT AGDTF G  A  L  G  +  A+R    AAALSVTR GAQ  +PT +E+ A
Sbjct: 234 AVDVVDTTGAGDTFNGALAVFLHEGLPQ--AVRKACAAAALSVTRLGAQGGMPTRVELDA 291

Query: 302 F 302
           +
Sbjct: 292 W 292


Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 309
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 297
Length adjustment: 27
Effective length of query: 277
Effective length of database: 270
Effective search space:    74790
Effective search space used:    74790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate N515DRAFT_3101 N515DRAFT_3101 (ribokinase)
to HMM TIGR02152 (rbsK: ribokinase (EC 2.7.1.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.20860.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20860.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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