Align Xylose isomerase (EC 5.3.1.5) (characterized)
to candidate N515DRAFT_3229 N515DRAFT_3229 D-xylose isomerase (EC 5.3.1.5)
Query= reanno::BFirm:BPHYT_RS32825 (440 letters) >FitnessBrowser__Dyella79:N515DRAFT_3229 Length = 438 Score = 680 bits (1755), Expect = 0.0 Identities = 313/437 (71%), Positives = 372/437 (85%) Query: 1 MSYFEHIPEIRYEGPQSDNPLAYRHYDKSKKVLGKTLEEHLRIAVCYWHTFVWPGVDIFG 60 MSYFEH+ IRY G ++D+PLA+RHYD S+ +LGK ++EHLR+AVCYWH+FVWPG+D+FG Sbjct: 1 MSYFEHVAPIRYAGAKTDDPLAFRHYDPSRVILGKRMDEHLRLAVCYWHSFVWPGMDMFG 60 Query: 61 QGTFRRPWQQAGDAMERAQQKADSAFEFFSKLGTPYYTFHDTDVSPEGSNLKEYSENFLR 120 GTF+RPWQQAGD M +A KAD+AF+FF +LG P+YTFHDTDV+PEG+NL EYS NF Sbjct: 61 AGTFQRPWQQAGDLMAQAHAKADAAFDFFQRLGAPFYTFHDTDVAPEGANLAEYSRNFAA 120 Query: 121 ITDYLARKQESTGIKLLWGTANLFSHPRYAAGAATSPDPEVFAFAATQVRHALDATQRLG 180 + D L KQ TG+KLLWGTANLFSHPRYAAGAA+SP PEVFA+AA+QV HA+ AT RLG Sbjct: 121 MVDVLEAKQAQTGMKLLWGTANLFSHPRYAAGAASSPQPEVFAYAASQVFHAMGATHRLG 180 Query: 181 GDNYVLWGGREGYDTLLNTDLVRERDQLARFLHMVVDHAHKIGFKGSLLIEPKPQEPTKH 240 G NYVLWGGREGYDTLLNTDL RER QL RF MVV+H HK+GF+G++LIEPKPQEPTKH Sbjct: 181 GANYVLWGGREGYDTLLNTDLRRERAQLGRFFQMVVEHKHKLGFQGTILIEPKPQEPTKH 240 Query: 241 QYDYDVATVHGFLLQHGLDKEIRVNIEANHATLAGHSFHHEIATAYALGIFGSVDANRGD 300 QYDYD ATV+GFL + GL++E++VN+EANHATLAGHSFHHE+ATA +LG+FGS+DANRGD Sbjct: 241 QYDYDTATVYGFLKEFGLEREVKVNLEANHATLAGHSFHHEVATAISLGVFGSIDANRGD 300 Query: 301 PQNGWDTDQFPNSVEELTLAFYEILKHGGFTTGGMNFDSKVRRQSVDPEDLFYGHIGAID 360 PQNGWDTDQFPNSVEELTL YEIL+ GGFTTGG NFD+KVRRQSVD DLF+GH+GAID Sbjct: 301 PQNGWDTDQFPNSVEELTLVMYEILQAGGFTTGGFNFDTKVRRQSVDAADLFHGHVGAID 360 Query: 361 NLALAVERAAVLIENDRLDQFKRQRYSGWDAEFGRKISSGDYSLSALAEEAMARGLNPQH 420 LALA+ERAA +I++DRL FK QRY+GWDA G++I G Y+L ALA+EA R L P H Sbjct: 361 ALALALERAAKMIDDDRLAAFKAQRYAGWDAGLGQQILDGGYTLQALADEAAKRDLRPGH 420 Query: 421 ASGHQELMENIVNQAIY 437 SG QE +EN+VN+ IY Sbjct: 421 VSGQQERLENLVNRYIY 437 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 755 Number of extensions: 20 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 440 Length of database: 438 Length adjustment: 32 Effective length of query: 408 Effective length of database: 406 Effective search space: 165648 Effective search space used: 165648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate N515DRAFT_3229 N515DRAFT_3229 (D-xylose isomerase (EC 5.3.1.5))
to HMM TIGR02630 (xylA: xylose isomerase (EC 5.3.1.5))
../bin/blast/fastacmd -i /tmp/list.13140.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13140.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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