Align Xylose isomerase (EC 5.3.1.5) (characterized)
to candidate N515DRAFT_3229 N515DRAFT_3229 D-xylose isomerase (EC 5.3.1.5)
Query= reanno::BFirm:BPHYT_RS32825
(440 letters)
>FitnessBrowser__Dyella79:N515DRAFT_3229
Length = 438
Score = 680 bits (1755), Expect = 0.0
Identities = 313/437 (71%), Positives = 372/437 (85%)
Query: 1 MSYFEHIPEIRYEGPQSDNPLAYRHYDKSKKVLGKTLEEHLRIAVCYWHTFVWPGVDIFG 60
MSYFEH+ IRY G ++D+PLA+RHYD S+ +LGK ++EHLR+AVCYWH+FVWPG+D+FG
Sbjct: 1 MSYFEHVAPIRYAGAKTDDPLAFRHYDPSRVILGKRMDEHLRLAVCYWHSFVWPGMDMFG 60
Query: 61 QGTFRRPWQQAGDAMERAQQKADSAFEFFSKLGTPYYTFHDTDVSPEGSNLKEYSENFLR 120
GTF+RPWQQAGD M +A KAD+AF+FF +LG P+YTFHDTDV+PEG+NL EYS NF
Sbjct: 61 AGTFQRPWQQAGDLMAQAHAKADAAFDFFQRLGAPFYTFHDTDVAPEGANLAEYSRNFAA 120
Query: 121 ITDYLARKQESTGIKLLWGTANLFSHPRYAAGAATSPDPEVFAFAATQVRHALDATQRLG 180
+ D L KQ TG+KLLWGTANLFSHPRYAAGAA+SP PEVFA+AA+QV HA+ AT RLG
Sbjct: 121 MVDVLEAKQAQTGMKLLWGTANLFSHPRYAAGAASSPQPEVFAYAASQVFHAMGATHRLG 180
Query: 181 GDNYVLWGGREGYDTLLNTDLVRERDQLARFLHMVVDHAHKIGFKGSLLIEPKPQEPTKH 240
G NYVLWGGREGYDTLLNTDL RER QL RF MVV+H HK+GF+G++LIEPKPQEPTKH
Sbjct: 181 GANYVLWGGREGYDTLLNTDLRRERAQLGRFFQMVVEHKHKLGFQGTILIEPKPQEPTKH 240
Query: 241 QYDYDVATVHGFLLQHGLDKEIRVNIEANHATLAGHSFHHEIATAYALGIFGSVDANRGD 300
QYDYD ATV+GFL + GL++E++VN+EANHATLAGHSFHHE+ATA +LG+FGS+DANRGD
Sbjct: 241 QYDYDTATVYGFLKEFGLEREVKVNLEANHATLAGHSFHHEVATAISLGVFGSIDANRGD 300
Query: 301 PQNGWDTDQFPNSVEELTLAFYEILKHGGFTTGGMNFDSKVRRQSVDPEDLFYGHIGAID 360
PQNGWDTDQFPNSVEELTL YEIL+ GGFTTGG NFD+KVRRQSVD DLF+GH+GAID
Sbjct: 301 PQNGWDTDQFPNSVEELTLVMYEILQAGGFTTGGFNFDTKVRRQSVDAADLFHGHVGAID 360
Query: 361 NLALAVERAAVLIENDRLDQFKRQRYSGWDAEFGRKISSGDYSLSALAEEAMARGLNPQH 420
LALA+ERAA +I++DRL FK QRY+GWDA G++I G Y+L ALA+EA R L P H
Sbjct: 361 ALALALERAAKMIDDDRLAAFKAQRYAGWDAGLGQQILDGGYTLQALADEAAKRDLRPGH 420
Query: 421 ASGHQELMENIVNQAIY 437
SG QE +EN+VN+ IY
Sbjct: 421 VSGQQERLENLVNRYIY 437
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 755
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 438
Length adjustment: 32
Effective length of query: 408
Effective length of database: 406
Effective search space: 165648
Effective search space used: 165648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Align candidate N515DRAFT_3229 N515DRAFT_3229 (D-xylose isomerase (EC 5.3.1.5))
to HMM TIGR02630 (xylA: xylose isomerase (EC 5.3.1.5))
../bin/blast/fastacmd -i /tmp/list.20436.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20436.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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