Align Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 (characterized)
to candidate N515DRAFT_3517 N515DRAFT_3517 isocitrate dehydrogenase
Query= SwissProt::P16100
(741 letters)
>FitnessBrowser__Dyella79:N515DRAFT_3517
Length = 743
Score = 1186 bits (3069), Expect = 0.0
Identities = 593/740 (80%), Positives = 649/740 (87%)
Query: 2 STPKIIYTLTDEAPALATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATFPEYLTDTQK 61
+TPKIIYTLTDEAP LAT SLLPI+KAF G++GIAVETRDISLAGR++A FP+ L QK
Sbjct: 3 NTPKIIYTLTDEAPFLATQSLLPIVKAFAGAAGIAVETRDISLAGRILAQFPDLLKPEQK 62
Query: 62 ISDDLAELGKLATTPDANIIKLPNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTEKD 121
I+DDLAELG+LATTPDANIIKLPNISASVPQLKAAIKELQQQGY LPDYP+EPK + EKD
Sbjct: 63 IADDLAELGQLATTPDANIIKLPNISASVPQLKAAIKELQQQGYALPDYPDEPKNEQEKD 122
Query: 122 VKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMDNGDF 181
KARYD+ KGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWS DS+SHVAHMD GDF
Sbjct: 123 AKARYDRTKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSKDSQSHVAHMDGGDF 182
Query: 182 YGSEKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIE 241
YGSEK+A + SVKIE DG STVLK KT++ AGEIID++VMS+ AL F+ A++
Sbjct: 183 YGSEKSATVAQATSVKIEWTGTDGKSTVLKDKTAISAGEIIDAAVMSRKALAAFVDAQVA 242
Query: 242 DAKKQGVLLSVHLKATMMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGDLY 301
DAK+QGVL S+HLKATMMKVSDPIMFG +V EFYKD L KHA+ LKQIGFD NNGIGDLY
Sbjct: 243 DAKQQGVLFSLHLKATMMKVSDPIMFGIVVGEFYKDVLAKHADTLKQIGFDPNNGIGDLY 302
Query: 302 ARIKTLPEAKQKEIEADIQAVYAQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSG 361
AR+ LP KQ EI ADI+A YA+RP LAMVNSDKGITNLHVPSDVIVDASMPAMIRDSG
Sbjct: 303 ARLNALPTDKQAEITADIKAEYARRPALAMVNSDKGITNLHVPSDVIVDASMPAMIRDSG 362
Query: 362 KMWGPDGKLHDTKAVIPDRCYAGVYQVVIEDCKQHGAFDPTTMGSVPNVGLMAQKAEEYG 421
KMW +GKL DTKAVIPDR YAGVYQVVIEDCK HGAFDP +MGSVPNVGLMAQ AEEYG
Sbjct: 363 KMWNAEGKLQDTKAVIPDRSYAGVYQVVIEDCKAHGAFDPASMGSVPNVGLMAQAAEEYG 422
Query: 422 SHDKTFQIPADGVVRVTDESGKLLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATN 481
SH+KTFQI ADGVVRV D++G +LLE +VEAGDIWRMCQ KDAPIQDWVKLAV RAR +
Sbjct: 423 SHNKTFQIAADGVVRVVDDAGNVLLEHAVEAGDIWRMCQTKDAPIQDWVKLAVTRARLSG 482
Query: 482 TPAVFWLDPARAHDAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTISV 541
TPAVFWLDP RAHDAQ+I KVERYLKD+DT GLDIR++SPV+ATRFSL RIR+G+DTISV
Sbjct: 483 TPAVFWLDPKRAHDAQLIQKVERYLKDHDTGGLDIRVMSPVDATRFSLERIRKGQDTISV 542
Query: 542 TGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRW 601
TGNVLRDYLTDLFPIMELGTSAKMLSIVPLM+GGGLFETGAGGSAPKHVQQFLEE YLRW
Sbjct: 543 TGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFLEEDYLRW 602
Query: 602 DSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGSHF 661
DSLGEFLALAAS EHLGN Y N KA VLA LDQA GKILDNNKSPARKVGE+DNRGSHF
Sbjct: 603 DSLGEFLALAASFEHLGNRYGNAKAGVLAKALDQANGKILDNNKSPARKVGELDNRGSHF 662
Query: 662 YLALYWAQALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGKPVDIAGYYHPNTD 721
YLA+YWAQALA Q +D EL+A F +AKALT+NE KI+GEL AQGK VDI GYYHP+
Sbjct: 663 YLAMYWAQALAGQDDDAELKATFAPVAKALTENEEKIIGELNGAQGKAVDIHGYYHPDIA 722
Query: 722 LTSKAIRPSATFNAALAPLA 741
L SKA+RPSATFNAA+ LA
Sbjct: 723 LLSKAMRPSATFNAAVDGLA 742
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1641
Number of extensions: 60
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 743
Length adjustment: 40
Effective length of query: 701
Effective length of database: 703
Effective search space: 492803
Effective search space used: 492803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)
Align candidate N515DRAFT_3517 N515DRAFT_3517 (isocitrate dehydrogenase)
to HMM TIGR00178 (isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))
../bin/blast/fastacmd -i /tmp/list.25504.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25504.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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