Alignments for a candidate for glcB in Dyella japonica UNC79MFTsu3.2

Align malate synthase A (EC 2.3.3.9) (characterized)
to candidate N515DRAFT_4124 N515DRAFT_4124 malate synthase

Query= ecocyc::MALATE-SYNTHASE
         (533 letters)



>FitnessBrowser__Dyella79:N515DRAFT_4124
          Length = 543

 Score =  529 bits (1363), Expect = e-155
 Identities = 283/529 (53%), Positives = 347/529 (65%), Gaps = 18/529 (3%)

Query: 18  GEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDAD 77
           G   + ILT  A+ FL +L   F  +R  LLAAR  +Q   D G LPDF ++T +IR+  
Sbjct: 20  GPGHESILTPAALAFLADLHHRFNDRRLDLLAARRTRQARYDAGELPDFRADTLAIREGR 79

Query: 78  WKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPDWNKVIDGQINLR 137
           W +  IPA L+DRRVEITGPVERKM+INALN+  KVFMADFEDS AP      DGQINLR
Sbjct: 80  WTVGKIPAALQDRRVEITGPVERKMIINALNSGAKVFMADFEDSSAPTLANQFDGQINLR 139

Query: 138 DAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFH 197
           DAVNGTI YT+  GK Y++  +PAVL+ R RG HLPE+H+T  GE + G+L DF LY FH
Sbjct: 140 DAVNGTIGYTSPEGKTYRVGHDPAVLVVRPRGWHLPERHLTVDGEPMSGALVDFGLYAFH 199

Query: 198 NYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQ 257
           N +AL A+  GPYFYLPK ++ +EAA W E  + AE+   LP   +KAT+LIETLPAVFQ
Sbjct: 200 NARALQARDRGPYFYLPKLEAMEEAALWHEAMAAAEEALGLPAHCMKATVLIETLPAVFQ 259

Query: 258 MDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIK 317
           M EILHALR+  VGLNCGRWDYIFSY+KT + + DR+LP+R  V M  PFL AYS LLI+
Sbjct: 260 MHEILHALRERAVGLNCGRWDYIFSYLKTFRGHRDRLLPERGQVLMTVPFLKAYSELLIQ 319

Query: 318 TCHKRGAFAMGGMAAFIPSK-DEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAM 376
           TCH+RGAFAMGGMAA IP K DE  N   L KV+ADK  E   GHDGTW+AHP L   A 
Sbjct: 320 TCHRRGAFAMGGMAAQIPIKGDEAANEAALAKVRADKLREVQAGHDGTWVAHPALVPVAR 379

Query: 377 AVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGN 436
            +F+  + S  NQL V R  D   + DQL+APC G  +  G   N+ VA++Y  AW+ G 
Sbjct: 380 EIFDQYMPS-PNQLNVAR-ADVQASRDQLIAPCAGTISRAGFDNNVEVALRYTAAWLDGL 437

Query: 437 GCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNG------------KPVTKALFRQMLG 484
           GCVPI+ LMEDAATAEI+R  +WQW+HH    + G             P+  ALF Q L 
Sbjct: 438 GCVPIHHLMEDAATAEIARAQLWQWLHHPGNPAGGTPAGDGLEFTDHAPIDFALFDQALA 497

Query: 485 EEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA 533
                + +          R DDAA L+  +T +++L DFLTLP Y  LA
Sbjct: 498 AHTHRLRASTHP---GAARADDAAALLATLTHAEQLGDFLTLPAYDRLA 543


Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 759
Number of extensions: 30
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 543
Length adjustment: 35
Effective length of query: 498
Effective length of database: 508
Effective search space:   252984
Effective search space used:   252984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate N515DRAFT_4124 N515DRAFT_4124 (malate synthase)
to HMM TIGR01344 (aceB: malate synthase A (EC 2.3.3.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.30792.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30792.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.