Align Glucokinase; EC 2.7.1.2; Glucose kinase (uncharacterized)
to candidate N515DRAFT_4210 N515DRAFT_4210 glucokinase
Query= curated2:B4SRZ6 (335 letters) >FitnessBrowser__Dyella79:N515DRAFT_4210 Length = 339 Score = 326 bits (835), Expect = 6e-94 Identities = 170/326 (52%), Positives = 219/326 (67%), Gaps = 6/326 (1%) Query: 2 SASSQPVLVADIGGTNARFALADTSLDAPLQQDSIREYAVAEFPSLGDAARHHLEQIGAT 61 S SS L+AD+GGTN RFALAD +L PL DS+R Y V +FPS+ D R + G + Sbjct: 3 STSSAKTLLADLGGTNVRFALADPALPQPLLLDSVRRYRVKDFPSMADTIRQYFADSGLS 62 Query: 62 ASRGVFAVAGR-VDGDEARITNHPWVISRSRTAAMLGFDELHLINDFAAQAMAISLLQSD 120 A R V A AGR VDG+ ++TN+PW +S AA L FD + LINDFAAQ MA+ LL + Sbjct: 63 AGRAVIAAAGRIVDGETVKVTNNPWQVSAHGLAADLKFDSVRLINDFAAQGMAVPLLACN 122 Query: 121 DVVQVGGAAWVPGKPG--QPRNYAVIGPGTGLGVGGLILRHGRCYPLETEGGHVSFPPGT 178 ++ VG P K G + + V+GPGTGLGV GL+LR GR LETEGGH F T Sbjct: 123 ELQPVGAPQ--PPKIGAHHSQTFVVVGPGTGLGVAGLLLRDGRWTVLETEGGHAGFAAHT 180 Query: 179 PEEIRILEILSEQFGRVSNERLICGPGLVNIHRAVCEMAGIDPGQLQPVDVTARALHG-D 237 E++ IL L+ +FGRVSNER+ICG GLVN++ A+ ++ G+ + P D+T RA G D Sbjct: 181 AEDVEILHRLNARFGRVSNERMICGNGLVNLYLALADIEGLKAEEYTPEDITTRANAGTD 240 Query: 238 PQAMRTVDVFCAVFGAIAGDLVLTQGAWDGVFLTGGLTPKMLDSLQHSGFRQRFEHKGRF 297 P +RTV+ +FG++AGDLVL+ G WDGVFLTGG+ P +L LQH GFR+RFE KGRF Sbjct: 241 PLCVRTVETLAGIFGSVAGDLVLSLGGWDGVFLTGGVLPILLPWLQHGGFRERFESKGRF 300 Query: 298 SSIMARVPSLAVMHPHAGLLGAAAYA 323 M +VP++A+MH GLLGAAA+A Sbjct: 301 KETMEQVPTVAMMHAETGLLGAAAFA 326 Lambda K H 0.321 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 323 Number of extensions: 15 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 335 Length of database: 339 Length adjustment: 28 Effective length of query: 307 Effective length of database: 311 Effective search space: 95477 Effective search space used: 95477 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate N515DRAFT_4210 N515DRAFT_4210 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.27527.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27527.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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