Alignments for a candidate for gcvT in Dyella japonica UNC79MFTsu3.2

Align aminomethyltransferase; EC 2.1.2.10 (characterized)
to candidate N515DRAFT_4331 N515DRAFT_4331 aminomethyltransferase

Query= CharProtDB::CH_000563
         (364 letters)



>FitnessBrowser__Dyella79:N515DRAFT_4331
          Length = 366

 Score =  402 bits (1033), Expect = e-117
 Identities = 214/367 (58%), Positives = 260/367 (70%), Gaps = 12/367 (3%)

Query: 1   MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGS 60
           M ++T L   H   GARMVDF GW MP++YGSQI+EHHAVR DAGMFDVSHMT+VDL G 
Sbjct: 1   MTEKTVLNATHRALGARMVDFGGWDMPINYGSQIEEHHAVRQDAGMFDVSHMTVVDLHGE 60

Query: 61  RTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREK 120
           RTREFLR+LLAN+V KL   GKALYS ML+  GGVIDDLIVY+F +  FRLVVN+ATR K
Sbjct: 61  RTREFLRHLLANNVDKLKAQGKALYSCMLDEQGGVIDDLIVYFFDDRHFRLVVNAATRAK 120

Query: 121 DLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFF----- 175
           DL+WI Q A+ FG+E+  R D SMIAVQGPNA+ K   L ++  R+ +  +  F      
Sbjct: 121 DLAWIEQQAKAFGVEVKERPDFSMIAVQGPNARDKVIGLLHEVDRERIRKLGKFVAAAAQ 180

Query: 176 GVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEAGMNL 235
           G     LFIA TGYTGE G+EI +P E A   W AL+ AGVKP GLGARDTLRLEAGMNL
Sbjct: 181 GPHGMPLFIARTGYTGEDGFEIIVPEEHAVALWEALLAAGVKPAGLGARDTLRLEAGMNL 240

Query: 236 YGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHGTEK-LVGLVMTEKGVLRN 294
           YGQ+MDET+SP  AN+GWTI+ +   RDFIGR+ LE Q+  G ++ +VGLV+ EKGVLR+
Sbjct: 241 YGQDMDETVSPWEANLGWTISLDEG-RDFIGRKVLEAQKAAGVKRVMVGLVLDEKGVLRH 299

Query: 295 ELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGIGETAIVQIRNREMPVKVTKP 354
              V   +      EG I SG+F+PTL  ++A AR+P G      V IR RE+PV+V K 
Sbjct: 300 GQKVLTANG-----EGEILSGSFAPTLNKAVAFARIPAGEPGEVRVDIRGREVPVRVVKY 354

Query: 355 VFVRNGK 361
            FVR+GK
Sbjct: 355 PFVRDGK 361


Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 472
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 366
Length adjustment: 30
Effective length of query: 334
Effective length of database: 336
Effective search space:   112224
Effective search space used:   112224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate N515DRAFT_4331 N515DRAFT_4331 (aminomethyltransferase)
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))

Software error:

../bin/blast/fastacmd -i /tmp/list.16804.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16804.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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