Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate Pf1N1B4_1102 Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
Query= SwissProt::Q9RF06
(475 letters)
>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1102
Length = 481
Score = 457 bits (1175), Expect = e-133
Identities = 227/480 (47%), Positives = 329/480 (68%), Gaps = 7/480 (1%)
Query: 1 MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAM 60
M +E VIGLE+H +L T SK+FS S FG+EPN+ +++DL PGVLPV+N+ AV A+
Sbjct: 1 MQWEVVIGLEIHTQLTTRSKIFSGSSTTFGSEPNTQASLVDLGMPGVLPVLNQEAVRMAV 60
Query: 61 RAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV-DGETKRIGIT 119
+A++ EI + F RKNYFYPD PK YQISQ + PI G++DI + DG KR+GIT
Sbjct: 61 MFGLAIDAEIGQHNVFARKNYFYPDLPKGYQISQMELPIVGKGHLDIALEDGTVKRVGIT 120
Query: 120 RLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYT 177
R H+EEDAGKS H+ + +DLNR GTPL+EIVSEPD+RS KEA AY++ + ++++Y
Sbjct: 121 RAHLEEDAGKSLHEEFNGATGIDLNRAGTPLLEIVSEPDMRSAKEAVAYVKAIHALVRYL 180
Query: 178 GVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLS 237
G+ D M EGSLRCD N+S+RP GQ +FGT+ E+KN+NSF ++ K + E +RQ E +
Sbjct: 181 GICDGNMAEGSLRCDCNVSIRPKGQVEFGTRCEIKNVNSFRFIEKAINTEVQRQIELIED 240
Query: 238 GGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPD 297
GG++ Q+TR +D + +T MR KE ++DYRYFP+PD++P+ I+D++ + VR T+PELP
Sbjct: 241 GGKVIQQTRLYDPNKDETRPMRSKEEANDYRYFPDPDLLPVVIEDSFLDDVRATLPELPP 300
Query: 298 ERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQV 357
+++ ++ + GL YDA VL ++E +D+FE G D KL +NW+M + LNK +
Sbjct: 301 QKRERFQEQFGLSVYDASVLATSREQADYFEKVASIGGDAKLAANWVMVELGSLLNKQGL 360
Query: 358 ELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEAT 417
++ + ++ E L GM+ I+D T+S KIAK VF +A G+A +I++ GL Q++D
Sbjct: 361 DIDQSPVSAEQLGGMLLRIKDNTISGKIAKVVFEAMANGEGSADEIIDKRGLKQVTDTGA 420
Query: 418 LLKFVNEALDNNEQSVEDYKNG----KGKAMGFLVGQIMKASKGQANPQLVNQLLKQELD 473
+ ++E L N + VE Y+ +GK GF VGQ MKASKG+ANPQ VN+LLK +L+
Sbjct: 421 ISAVLDEMLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQVNELLKSKLE 480
Lambda K H
0.313 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 635
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 481
Length adjustment: 34
Effective length of query: 441
Effective length of database: 447
Effective search space: 197127
Effective search space used: 197127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Align candidate Pf1N1B4_1102 (Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7))
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.7514.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7514.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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