Align Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 (characterized)
to candidate Pf1N1B4_1606 Glutamine synthetase type I (EC 6.3.1.2)
Query= SwissProt::Q3V5W6
(468 letters)
>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1606
Length = 468
Score = 912 bits (2357), Expect = 0.0
Identities = 440/468 (94%), Positives = 455/468 (97%)
Query: 1 MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALEDDFFEVGKMFDGSSIAGWKGI 60
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARD L++ FFE GKMFDGSSIAGWKGI
Sbjct: 1 MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDGLDEAFFEEGKMFDGSSIAGWKGI 60
Query: 61 EASDMILLPDDDTAVLDPFTEDATLILVCDIIEPSTMQGYDRDPRAIAHRAEEYLKTTGI 120
EASDMIL+PDD TAVLDPFTE+ TLILVCD+IEPSTMQGYDRDPRAIA RAEEYLK+TGI
Sbjct: 61 EASDMILMPDDSTAVLDPFTEEPTLILVCDVIEPSTMQGYDRDPRAIAKRAEEYLKSTGI 120
Query: 121 GDTVFAGPEPEFFIFDEVKFKSDISGSMFKIYSEQGSWMSDQDIEGGNKGHRPGVKGGYF 180
GDTVF GPEPEFFIFDEVKFKSDISGSMFKI+SEQGSWMSDQD+EGGNKGHRPGVKGGYF
Sbjct: 121 GDTVFVGPEPEFFIFDEVKFKSDISGSMFKIFSEQGSWMSDQDVEGGNKGHRPGVKGGYF 180
Query: 181 PVPPFDHDHEIRTAMCNALEEMGQTVEVHHHEVATAGQNEIGVKFNTLVKKADEVQTLKY 240
PVPPFDHDHEIRT+MCNA+EEMG +EVHHHEVATAGQNEIGVKFNTLV KADEVQTLKY
Sbjct: 181 PVPPFDHDHEIRTSMCNAMEEMGLVIEVHHHEVATAGQNEIGVKFNTLVAKADEVQTLKY 240
Query: 241 VVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSIAKDGKNTFAGEGYAGLSETALYFIGG 300
VHNVADAYGRTATFMPKPLYGDNGSGMHVH+SIAKDGKNTFAGEGYAGLS+TALYFIGG
Sbjct: 241 CVHNVADAYGRTATFMPKPLYGDNGSGMHVHLSIAKDGKNTFAGEGYAGLSDTALYFIGG 300
Query: 301 IIKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVNSPRGRRIEARF 360
IIKHGKALNGFTNP+TNSYKRLVPGFEAPVMLAYSARNRSASIRIPYV+SPR RRIEARF
Sbjct: 301 IIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPRARRIEARF 360
Query: 361 PDPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEE 420
PDPAANPYL FAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEE
Sbjct: 361 PDPAANPYLGFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEE 420
Query: 421 LDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC 468
LDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
Sbjct: 421 LDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC 468
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 950
Number of extensions: 39
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 468
Length adjustment: 33
Effective length of query: 435
Effective length of database: 435
Effective search space: 189225
Effective search space used: 189225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Align candidate Pf1N1B4_1606 (Glutamine synthetase type I (EC 6.3.1.2))
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))
../bin/blast/fastacmd -i /tmp/list.29409.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29409.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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