Alignments for a candidate for hisH in Pseudomonas fluorescens FW300-N1B4

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate Pf1N1B4_1626 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1626
          Length = 212

 Score =  198 bits (503), Expect = 7e-56
 Identities = 107/211 (50%), Positives = 127/211 (60%), Gaps = 4/211 (1%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           M  + V+DYGMGNL SVA+AL HV     V I+ +   IR ADRVV PG GA+ DCM  +
Sbjct: 1   MQTVAVIDYGMGNLHSVAKALEHVGA-GKVLITSDADVIREADRVVFPGVGAIRDCMAEI 59

Query: 61  RESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEEGD-TPGLGLLPGKVVRFDLEGMRQDD 119
           R  G    V E S+ +P  G+CVG Q L D SEE +    +GL PG+V  F  +    +D
Sbjct: 60  RRLGFDSLVREVSQDRPFLGICVGMQALLDSSEENNGVDCIGLFPGQVKFFGKD--LHED 117

Query: 120 GSLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFAC 179
           G   KVP MGWN V QT  HPLW  I D A FYFVHSYY     +  VVG   YG DFA 
Sbjct: 118 GEHLKVPHMGWNEVKQTVEHPLWHNIPDLARFYFVHSYYIAAGNARQVVGSGHYGVDFAA 177

Query: 180 AVARDNIFATQFHPEKSASAGLQLYRNFVHW 210
           A+A  + FA QFHPEKS + GLQL +NF  W
Sbjct: 178 ALADGSRFAVQFHPEKSHTHGLQLLQNFAAW 208


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 165
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 212
Length adjustment: 21
Effective length of query: 191
Effective length of database: 191
Effective search space:    36481
Effective search space used:    36481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate Pf1N1B4_1626 (Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-))
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.13012.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13012.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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