Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate Pf1N1B4_2547 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)
Query= SwissProt::P00901 (198 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2547 Length = 197 Score = 369 bits (947), Expect = e-107 Identities = 178/197 (90%), Positives = 188/197 (95%) Query: 2 LLMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAG 61 +L+MIDNYDSFTYNVVQYLGELG+EVKV+RNDE+TIA+IEALNPERIVVSPGPCTP+EAG Sbjct: 1 MLLMIDNYDSFTYNVVQYLGELGSEVKVVRNDELTIAEIEALNPERIVVSPGPCTPTEAG 60 Query: 62 VSIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVHHRDLGVFTGLNN 121 +SIEAI HFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPV H D GVF GLN Sbjct: 61 ISIEAIKHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVFHEDKGVFEGLNR 120 Query: 122 PLTVTRYHSLVVKRETLPDCLEVTAWTAHEDGSVDEIMGLRHKTLNIEGVQFHPESILTE 181 PLTVTRYHSL+VKRETLPDCLE+TAWT EDGSVDEIMGLRHKTLNIEGVQFHPESILTE Sbjct: 121 PLTVTRYHSLIVKRETLPDCLELTAWTQLEDGSVDEIMGLRHKTLNIEGVQFHPESILTE 180 Query: 182 QGHELFANFLKQTGGRR 198 QGHELFANFLKQTGG R Sbjct: 181 QGHELFANFLKQTGGTR 197 Lambda K H 0.320 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 237 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 198 Length of database: 197 Length adjustment: 20 Effective length of query: 178 Effective length of database: 177 Effective search space: 31506 Effective search space used: 31506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)
Align candidate Pf1N1B4_2547 (Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85))
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)
../bin/blast/fastacmd -i /tmp/list.25997.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25997.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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